{ "type": "genome", "identifier": "GCA_905209995.1", "organism": "uncultured Oscillospiraceae bacterium", "title": "uncultured Oscillospiraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905209995.1", "bioproject": "PRJEB37358", "biosample": "SAMEA7847119", "wgs_master": "CAJLVC000000000.1", "refseq_category": "na", "taxid": "707003", "species_taxid": "707003", "organism_name": "uncultured Oscillospiraceae bacterium", "infraspecific_name": "", "isolate": "ERR260135-bin.37", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/03", "asm_name": "ERR260135-mag-bin.37", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/209/995/GCA_905209995.1_ERR260135-mag-bin.37", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-03", "dateModified": "2021-02-03", "datePublished": "2021-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Oscillospiraceae bacterium" ], "sample_taxid": [ "707003" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Sweden" ], "sample_host_location_id": [], "data_size": "0.707 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2510917", "Number of Sequences": "128", "Longest Sequences (bp)": "89331", "N50 (bp)": "30149", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.7", "Number of CDSs": "2355", "Average Protein Length": "296.4", "Coding Ratio (%)": "83.4", "Number of rRNAs": "0", "Number of tRNAs": "41", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Ruthenibacterium lactatiformans", "strain": "strain=585-1", "accession": "GCA_000949455.1", "taxid": 1550024, "species_taxid": 1550024, "relation_to_type": "suspected-type", "validated": true, "ani": 78.2008, "matched_fragments": 216, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fournierella massiliensis", "strain": "strain=DSM 100451", "accession": "GCA_004345265.1", "taxid": 1650663, "species_taxid": 1650663, "relation_to_type": "type", "validated": true, "ani": 76.8661, "matched_fragments": 131, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium gallinarum", "strain": "strain=JCM 17207", "accession": "GCA_022180365.1", "taxid": 2903556, "species_taxid": 2903556, "relation_to_type": "type", "validated": true, "ani": 76.2001, "matched_fragments": 53, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium prausnitzii", "strain": "strain=ATCC 27768", "accession": "GCA_003324185.1", "taxid": 853, "species_taxid": 853, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0738, "matched_fragments": 72, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium duncaniae", "strain": "strain=JCM 31915", "accession": "GCA_010509575.1", "taxid": 411483, "species_taxid": 411483, "relation_to_type": "type", "validated": true, "ani": 76.02, "matched_fragments": 63, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium duncaniae", "strain": "strain=A2-165", "accession": "GCA_000162015.1", "taxid": 411483, "species_taxid": 411483, "relation_to_type": "type", "validated": true, "ani": 76.0111, "matched_fragments": 60, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Faecalibacterium hattorii", "strain": "strain=APC922/41-1", "accession": "GCA_003287455.1", "taxid": 2935520, "species_taxid": 2935520, "relation_to_type": "type", "validated": true, "ani": 75.9854, "matched_fragments": 61, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Subdoligranulum variabile", "strain": "strain=DSM 15176", "accession": "GCA_000157955.1", "taxid": 214851, "species_taxid": 214851, "relation_to_type": "type", "validated": true, "ani": 75.8527, "matched_fragments": 55, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Subdoligranulum variabile", "strain": "strain=DSM 15176", "accession": "GCA_025152575.1", "taxid": 214851, "species_taxid": 214851, "relation_to_type": "type", "validated": true, "ani": 75.8205, "matched_fragments": 55, "total_fragments": 770, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018380115.1", "gtdb_species": "s__Ruthenibacterium sp018380115", "ani": 95.4628, "matched_fragments": 666, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.78", "min_intra_species_ani": "95.38", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.83", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_900546885.1", "gtdb_species": "s__Ruthenibacterium merdipullorum", "ani": 86.5205, "matched_fragments": 505, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "98.69", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.82", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_905212515.1", "gtdb_species": "s__Ruthenibacterium sp905212515", "ani": 78.7487, "matched_fragments": 195, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019113785.1", "gtdb_species": "s__Ruthenibacterium merdigallinarum", "ani": 78.4788, "matched_fragments": 226, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000949455.1", "gtdb_species": "s__Ruthenibacterium lactatiformans", "ani": 78.2184, "matched_fragments": 215, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.75", "min_intra_species_ani": "98.24", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.72", "num_clustered_genomes": 47, "status": "-" }, { "accession": "GCA_910587145.1", "gtdb_species": "s__Ruthenibacterium sp013316265", "ani": 78.1099, "matched_fragments": 174, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.81", "min_intra_species_ani": "99.81", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_014799685.1", "gtdb_species": "s__Ruthenibacterium sp014799685", "ani": 77.9739, "matched_fragments": 179, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.75", "min_intra_species_ani": "97.75", "mean_intra_species_af": "0.71", "min_intra_species_af": "0.71", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_019116345.1", "gtdb_species": "s__Fournierella merdipullorum", "ani": 77.7396, "matched_fragments": 134, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Fournierella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900543285.1", "gtdb_species": "s__Fournierella sp900543285", "ani": 77.5513, "matched_fragments": 140, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Fournierella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.38", "min_intra_species_ani": "98.75", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002160015.1", "gtdb_species": "s__Anaerofilum faecale", "ani": 77.4246, "matched_fragments": 153, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Anaerofilum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.90", "min_intra_species_ani": "98.89", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.94", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_019119935.1", "gtdb_species": "s__Ruthenibacterium merdavium", "ani": 77.1044, "matched_fragments": 97, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Ruthenibacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.64", "min_intra_species_ani": "98.59", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.85", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004345265.1", "gtdb_species": "s__Fournierella massiliensis", "ani": 76.8661, "matched_fragments": 131, "total_fragments": 770, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Oscillospirales;f__Ruminococcaceae;g__Fournierella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.397, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 30.0, "optimum_ph": 6.25, "genome_size": 4470621.5, "gc_content": 49.895, "coding_genes": 4347.333, "rRNA16S_genes": 3.0, "tRNA_genes": 61.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": null, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Ruminococcaceae", "g__Ruthenibacterium", "s__Ruthenibacterium sp018380115" ], "_genome_taxon": [ "uncultured", "Oscillospiraceae", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Oscillospirales", "f__Ruminococcaceae", "g__Ruthenibacterium", "s__Ruthenibacterium sp018380115", "Bacteria", "Bacillota", "A", "Clostridia", "Oscillospirales", "Ruminococcaceae", "Ruthenibacterium", "Ruthenibacterium", "sp018380115" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }