{ "type": "genome", "identifier": "GCA_905211365.1", "organism": "uncultured Bacteroidales bacterium", "title": "uncultured Bacteroidales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905211365.1", "bioproject": "PRJEB37358", "biosample": "SAMEA7847721", "wgs_master": "CAJMAF000000000.1", "refseq_category": "na", "taxid": "194843", "species_taxid": "194843", "organism_name": "uncultured Bacteroidales bacterium", "infraspecific_name": "", "isolate": "ERR414382-bin.6", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/04", "asm_name": "ERR414382-mag-bin.6", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/211/365/GCA_905211365.1_ERR414382-mag-bin.6", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-04", "dateModified": "2021-02-04", "datePublished": "2021-02-04", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Bacteroidales bacterium" ], "sample_taxid": [ "194843" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], "sample_host_location_id": [], "data_size": "0.610 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2138449", "Number of Sequences": "123", "Longest Sequences (bp)": "88952", "N50 (bp)": "23383", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.7", "Number of CDSs": "1723", "Average Protein Length": "354.8", "Coding Ratio (%)": "85.8", "Number of rRNAs": "1", "Number of tRNAs": "30", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_900544815.1", "gtdb_species": "s__Egerieousia sp900544815", "ani": 98.7547, "matched_fragments": 514, "total_fragments": 654, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Egerieousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.36", "min_intra_species_ani": "98.78", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.82", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_017625535.1", "gtdb_species": "s__Egerieousia sp017625535", "ani": 77.7725, "matched_fragments": 78, "total_fragments": 654, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Egerieousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.92", "min_intra_species_ani": "97.58", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_017482565.1", "gtdb_species": "s__Egerieousia sp017482565", "ani": 77.4096, "matched_fragments": 61, "total_fragments": 654, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Egerieousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017380095.1", "gtdb_species": "s__Egerieousia sp017380095", "ani": 77.3944, "matched_fragments": 74, "total_fragments": 654, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Egerieousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017556665.1", "gtdb_species": "s__Egerieousia sp017556665", "ani": 77.2883, "matched_fragments": 54, "total_fragments": 654, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Egerieousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.02", "min_intra_species_ani": "96.98", "mean_intra_species_af": "0.72", "min_intra_species_af": "0.70", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_015060245.1", "gtdb_species": "s__Egerieousia sp015060245", "ani": 77.1416, "matched_fragments": 71, "total_fragments": 654, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Egerieousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015060225.1", "gtdb_species": "s__Egerieousia sp015060225", "ani": 77.0882, "matched_fragments": 75, "total_fragments": 654, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Egerieousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017398125.1", "gtdb_species": "s__Egerieousia sp017398125", "ani": 76.8732, "matched_fragments": 64, "total_fragments": 654, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Egerieousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.51", "min_intra_species_ani": "98.51", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017631435.1", "gtdb_species": "s__Egerieousia sp017631435", "ani": 76.7571, "matched_fragments": 75, "total_fragments": 654, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__UBA932;g__Egerieousia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.217, "cell_length": 0.157, "doubling_h": 0.206, "growth_tmp": 36.585, "optimum_tmp": 36.041, "optimum_ph": 7.086, "genome_size": 3658719.825, "gc_content": 44.947, "coding_genes": 3043.648, "rRNA16S_genes": 4.032, "tRNA_genes": 57.661, "gram_stain": 0.014, "sporulation": 0.0, "motility": 0.04, "range_salinity": 0.0, "facultative_respiration": 0.006, "anaerobic_respiration": 0.958, "aerobic_respiration": 0.034, "mesophilic_range_tmp": 0.985, "thermophilic_range_tmp": 0.014, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.95, "coccus_cell_shape": 0.024, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.024, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__UBA932", "g__Egerieousia", "s__Egerieousia sp900544815" ], "_genome_taxon": [ "uncultured", "Bacteroidales", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Bacteroidales", "f__UBA932", "g__Egerieousia", "s__Egerieousia sp900544815", "Bacteria", "Bacteroidota", "Bacteroidia", "Bacteroidales", "UBA932", "Egerieousia", "Egerieousia", "sp900544815" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }