{ "type": "genome", "identifier": "GCA_905213455.1", "organism": "uncultured Streptococcus sp.", "title": "uncultured Streptococcus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905213455.1", "bioproject": "PRJEB37358", "biosample": "SAMEA7847981", "wgs_master": "CAJMIG000000000.1", "refseq_category": "na", "taxid": "83427", "species_taxid": "83427", "organism_name": "uncultured Streptococcus sp.", "infraspecific_name": "", "isolate": "SRR413610-bin.13", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/02/03", "asm_name": "SRR413610-mag-bin.13", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/213/455/GCA_905213455.1_SRR413610-mag-bin.13", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-02-03", "dateModified": "2021-02-03", "datePublished": "2021-02-03", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Streptococcus sp." ], "sample_taxid": [ "83427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.367 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 63.89, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1263475", "Number of Sequences": "231", "Longest Sequences (bp)": "27332", "N50 (bp)": "6410", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.6", "Number of CDSs": "1052", "Average Protein Length": "308.6", "Coding Ratio (%)": "77.1", "Number of rRNAs": "0", "Number of tRNAs": "3", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus halitosis", "strain": "strain=VT-4", "accession": "GCA_003143695.2", "taxid": 2172545, "species_taxid": 2172545, "relation_to_type": "type", "validated": true, "ani": 95.056, "matched_fragments": 290, "total_fragments": 298, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptococcus oralis", "strain": "strain=FDAARGOS_1020", "accession": "GCA_016127555.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 93.5095, "matched_fragments": 278, "total_fragments": 298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oralis", "strain": "strain=CCUG 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1303, "relation_to_type": "type", "validated": true, "ani": 93.4261, "matched_fragments": 277, "total_fragments": 298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 92.1882, "matched_fragments": 274, "total_fragments": 298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 86.6779, "matched_fragments": 240, "total_fragments": 298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 86.3338, "matched_fragments": 259, "total_fragments": 298, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 77.0639, "matched_fragments": 53, "total_fragments": 298, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 63.89, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000257845.1", "gtdb_species": "s__Streptococcus oralis_W", "ani": 95.0772, "matched_fragments": 289, "total_fragments": 298, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.64", "min_intra_species_ani": "95.02", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.90", "num_clustered_genomes": 8, "status": "inconclusive" }, { "accession": "GCF_003143695.2", "gtdb_species": "s__Streptococcus halitosis", "ani": 95.056, "matched_fragments": 290, "total_fragments": 298, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.61", "min_intra_species_ani": "95.24", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.88", "num_clustered_genomes": 11, "status": "inconclusive" }, { "accession": "GCA_000344275.1", "gtdb_species": "s__Streptococcus oralis_E", "ani": 94.6623, "matched_fragments": 283, "total_fragments": 298, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.70", "min_intra_species_ani": "95.70", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, 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