{ "type": "genome", "identifier": "GCA_905370255.1", "organism": "Streptococcus oralis", "title": "Streptococcus oralis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905370255.1", "bioproject": "PRJEB42319", "biosample": "SAMEA8391448", "wgs_master": "CAJPKC000000000.1", "refseq_category": "na", "taxid": "1303", "species_taxid": "1303", "organism_name": "Streptococcus oralis", "infraspecific_name": "", "isolate": "DRR046102-mag-bin.5", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/26", "asm_name": "DRR046102-mag-bin.5", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/370/255/GCA_905370255.1_DRR046102-mag-bin.5", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-26", "dateModified": "2021-03-26", "datePublished": "2021-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptococcus oralis" ], "sample_taxid": [ "1303" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.631 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 29.55, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2208216", "Number of Sequences": "408", "Longest Sequences (bp)": "125824", "N50 (bp)": "5429", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.0", "Number of CDSs": "1864", "Average Protein Length": "270.1", "Coding Ratio (%)": "68.4", "Number of rRNAs": "0", "Number of tRNAs": "44", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus infantis", "strain": "strain=ATCC 700779", "accession": "GCA_000260755.1", "taxid": 68892, "species_taxid": 68892, "relation_to_type": "suspected-type", "validated": true, "ani": 93.5744, "matched_fragments": 259, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus infantis", "strain": "strain=ATCC 700779", "accession": "GCA_000187465.1", "taxid": 68892, "species_taxid": 68892, "relation_to_type": "suspected-type", "validated": true, "ani": 93.4949, "matched_fragments": 263, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus timonensis", "strain": "strain=Marseille-P2915", "accession": "GCA_900095845.1", "taxid": 1852387, "species_taxid": 1852387, "relation_to_type": "type", "validated": true, "ani": 88.6581, "matched_fragments": 251, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus peroris", "strain": "strain=ATCC 700780", "accession": "GCA_000187585.1", "taxid": 68891, "species_taxid": 68891, "relation_to_type": "type", "validated": true, "ani": 87.5926, "matched_fragments": 234, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus symci", "strain": "strain=C17", "accession": "GCA_006385165.1", "taxid": 2588991, "species_taxid": 2588991, "relation_to_type": "type", "validated": true, "ani": 81.8242, "matched_fragments": 210, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus oralis", "strain": "strain=CCUG 24891", "accession": "GCA_001639375.1", "taxid": 1303, "species_taxid": 1303, "relation_to_type": "type", "validated": true, "ani": 81.4299, "matched_fragments": 203, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus halitosis", "strain": "strain=VT-4", "accession": "GCA_003143695.2", "taxid": 2172545, "species_taxid": 2172545, "relation_to_type": "type", "validated": true, "ani": 81.2034, "matched_fragments": 209, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus shenyangsis", "strain": "strain=D19", "accession": "GCA_006385785.1", "taxid": 2589786, "species_taxid": 2589786, "relation_to_type": "type", "validated": true, "ani": 81.1796, "matched_fragments": 210, "total_fragments": 525, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 29.55, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_905370255.1", "gtdb_species": "s__Streptococcus oralis_BL", "ani": 100.0, "matched_fragments": 517, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013394695.1", "gtdb_species": "s__Streptococcus sp013394695", "ani": 93.855, "matched_fragments": 261, "total_fragments": 525, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000187465.1", "gtdb_species": "s__Streptococcus infantis", "ani": 93.4949, "matched_fragments": 263, "total_fragments": 525, "gtdb_taxonomy": 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"MEO_0000617", "label": "saliva" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }