{ "type": "genome", "identifier": "GCA_905372115.1", "organism": "uncultured Streptococcus sp.", "title": "uncultured Streptococcus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905372115.1", "bioproject": "PRJEB43277", "biosample": "SAMEA8395135", "wgs_master": "CAJPNR000000000.1", "refseq_category": "na", "taxid": "83427", "species_taxid": "83427", "organism_name": "uncultured Streptococcus sp.", "infraspecific_name": "", "isolate": "SRR9217399-mag-bin.6", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/26", "asm_name": "SRR9217399-mag-bin.6", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/115/GCA_905372115.1_SRR9217399-mag-bin.6", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-26", "dateModified": "2021-03-26", "datePublished": "2021-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Streptococcus sp." ], "sample_taxid": [ "83427" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.659 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.22, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2307030", "Number of Sequences": "81", "Longest Sequences (bp)": "189918", "N50 (bp)": "44688", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "43.4", "Number of CDSs": "2181", "Average Protein Length": "304.5", "Coding Ratio (%)": "86.4", "Number of rRNAs": "0", "Number of tRNAs": "43", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC7863", "accession": "GCA_900475505.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 94.3204, "matched_fragments": 637, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=SK1", "accession": "GCA_000194945.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 94.2999, "matched_fragments": 639, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sanguinis", "strain": "strain=NCTC 7863", "accession": "GCA_001593525.1", "taxid": 1305, "species_taxid": 1305, "relation_to_type": "suspected-type", "validated": true, "ani": 94.2114, "matched_fragments": 618, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gordonii", "strain": "strain=ATCC 10558", "accession": "GCA_001469295.1", "taxid": 1302, "species_taxid": 1302, "relation_to_type": "suspected-type", "validated": true, "ani": 85.7848, "matched_fragments": 384, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gordonii", "strain": "strain=FDAARGOS 1454", "accession": "GCA_019046945.1", "taxid": 1302, "species_taxid": 1302, "relation_to_type": "suspected-type", "validated": true, "ani": 85.7324, "matched_fragments": 393, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gordonii", "strain": "strain=NCTC7865", "accession": "GCA_900475015.1", "taxid": 1302, "species_taxid": 1302, "relation_to_type": "suspected-type", "validated": true, "ani": 85.6512, "matched_fragments": 398, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus gordonii", "strain": "strain=CCUG 33482", "accession": "GCA_001553855.1", "taxid": 1302, "species_taxid": 1302, "relation_to_type": "suspected-type", "validated": true, "ani": 85.5957, "matched_fragments": 395, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus sinensis", "strain": "strain=HKU4", "accession": "GCA_000767835.1", "taxid": 176090, "species_taxid": 176090, "relation_to_type": "type", "validated": true, "ani": 84.8685, "matched_fragments": 377, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_000222765.2", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 84.791, "matched_fragments": 384, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_011612585.1", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 84.7884, "matched_fragments": 394, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus cristatus", "strain": "strain=ATCC 51100", "accession": "GCA_000187855.1", "taxid": 45634, "species_taxid": 45634, "relation_to_type": "type", "validated": true, "ani": 84.7282, "matched_fragments": 384, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus constellatus subsp. constellatus", "strain": "strain=CCUG 24889", "accession": "GCA_023167545.1", "taxid": 184246, "species_taxid": 76860, "relation_to_type": "type", "validated": true, "ani": 80.2078, "matched_fragments": 172, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus downii", "strain": "strain=CECT 9732", "accession": "GCA_004353325.1", "taxid": 1968889, "species_taxid": 1968889, "relation_to_type": "type", "validated": true, "ani": 79.4607, "matched_fragments": 161, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus vulneris", "strain": "strain=DM3B3", "accession": "GCA_019218685.1", "taxid": 2853160, "species_taxid": 2853160, "relation_to_type": "type", "validated": true, "ani": 79.3551, "matched_fragments": 138, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus toyakuensis", "strain": "strain=TP1632", "accession": "GCA_024346585.1", "taxid": 2819619, "species_taxid": 2819619, "relation_to_type": "type", "validated": true, "ani": 79.185, "matched_fragments": 148, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptococcus parasuis", "strain": "strain=SUT-286", "accession": "GCA_021654455.1", "taxid": 1501662, "species_taxid": 1501662, "relation_to_type": "suspected-type", "validated": true, "ani": 77.932, "matched_fragments": 90, "total_fragments": 727, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.22, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_905372115.1", "gtdb_species": "s__Streptococcus sp905372115", "ani": 100.0, "matched_fragments": 720, "total_fragments": 727, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_900635155.1", "gtdb_species": "s__Streptococcus sanguinis_G", "ani": 94.569, "matched_fragments": 645, "total_fragments": 727, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003943655.1", "gtdb_species": "s__Streptococcus sanguinis_F", "ani": 94.51, "matched_fragments": 618, "total_fragments": 727, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.55", "min_intra_species_ani": "96.90", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.95", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001078705.1", "gtdb_species": "s__Streptococcus sanguinis_D", "ani": 94.4999, "matched_fragments": 649, "total_fragments": 727, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000212855.1", "gtdb_species": "s__Streptococcus sanguinis_A", "ani": 94.483, "matched_fragments": 657, "total_fragments": 727, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Streptococcaceae;g__Streptococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003943735.1", "gtdb_species": 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"Streptococcus", "Streptococcus", "sp905372115" ], "_meo": [ { "id": "MEO_0000467", "label": "oral cavity" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }