{ "type": "genome", "identifier": "GCA_905372145.1", "organism": "Corynebacterium durum", "title": "Corynebacterium durum", "description": "derived from metagenome; incomplete metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905372145.1", "bioproject": "PRJEB43277", "biosample": "SAMEA8395137", "wgs_master": "CAJPOA000000000.1", "refseq_category": "na", "taxid": "61592", "species_taxid": "61592", "organism_name": "Corynebacterium durum", "infraspecific_name": "", "isolate": "SRR9217399-mag-bin.13", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/26", "asm_name": "SRR9217399-mag-bin.13", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/145/GCA_905372145.1_SRR9217399-mag-bin.13", "excluded_from_refseq": "derived from metagenome; incomplete metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-26", "dateModified": "2021-03-26", "datePublished": "2021-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Corynebacterium durum" ], "sample_taxid": [ "61592" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.627 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 96.41, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2182802", "Number of Sequences": "221", "Longest Sequences (bp)": "80013", "N50 (bp)": "13297", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.8", "Number of CDSs": "1904", "Average Protein Length": "306.8", "Coding Ratio (%)": "80.3", "Number of rRNAs": "0", "Number of tRNAs": "31", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Corynebacterium durum", "strain": "strain=DSM 45333", "accession": "GCA_013410305.1", "taxid": 61592, "species_taxid": 61592, "relation_to_type": "type", "validated": true, "ani": 98.8317, "matched_fragments": 617, "total_fragments": 625, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Corynebacterium vitaeruminis", "strain": "strain=DSM 20294", "accession": "GCA_000550805.1", "taxid": 38305, "species_taxid": 38305, "relation_to_type": "type", "validated": true, "ani": 77.868, "matched_fragments": 101, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium canis", "strain": "strain=CCUG 58627", "accession": "GCA_007859215.1", "taxid": 679663, "species_taxid": 679663, "relation_to_type": "type", "validated": true, "ani": 77.8451, "matched_fragments": 119, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium efficiens", "strain": "strain=YS-314", "accession": "GCA_000160795.1", "taxid": 152794, "species_taxid": 152794, "relation_to_type": "type", "validated": true, "ani": 77.582, "matched_fragments": 89, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032", "accession": "GCA_011761195.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 77.4064, "matched_fragments": 61, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032", "accession": "GCA_002847405.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 77.3379, "matched_fragments": 64, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ciconiae", "strain": "strain=DSM 44920", "accession": "GCA_000372385.1", "taxid": 227319, "species_taxid": 227319, "relation_to_type": "type", "validated": true, "ani": 77.3318, "matched_fragments": 98, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium humireducens", "strain": "strain=NBRC 106098", "accession": "GCA_001571025.1", "taxid": 1223514, "species_taxid": 1223514, "relation_to_type": "type", "validated": true, "ani": 77.3266, "matched_fragments": 91, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium halotolerans", "strain": "strain=YIM 70093 = DSM 44683", "accession": "GCA_000341345.1", "taxid": 225326, "species_taxid": 225326, "relation_to_type": "type", "validated": true, "ani": 77.2833, "matched_fragments": 87, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium silvaticum", "strain": "strain=KL0182", "accession": "GCA_004382825.2", "taxid": 2320431, "species_taxid": 2320431, "relation_to_type": "type", "validated": true, "ani": 77.2698, "matched_fragments": 57, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium tapiri", "strain": "strain=LMG 28165", "accession": "GCA_006334925.1", "taxid": 1448266, "species_taxid": 1448266, "relation_to_type": "type", "validated": true, "ani": 77.2607, "matched_fragments": 66, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium glutamicum", "strain": "strain=ATCC 13032", "accession": "GCA_000011325.1", "taxid": 1718, "species_taxid": 1718, "relation_to_type": "type", "validated": true, "ani": 77.2132, "matched_fragments": 64, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium occultum", "strain": "strain=2039", "accession": "GCA_009734425.1", "taxid": 2675219, "species_taxid": 2675219, "relation_to_type": "type", "validated": true, "ani": 77.1918, "matched_fragments": 88, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium kalinowskii", "strain": "strain=1959", "accession": "GCA_009734385.1", "taxid": 2675216, "species_taxid": 2675216, "relation_to_type": "type", "validated": true, "ani": 77.1581, "matched_fragments": 82, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium suranareeae", "strain": "strain=N24", "accession": "GCA_002355155.1", "taxid": 2506452, "species_taxid": 2506452, "relation_to_type": "type", "validated": true, "ani": 76.9592, "matched_fragments": 73, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium wankanglinii", "strain": "strain=zg-913", "accession": "GCA_013601005.1", "taxid": 2735136, "species_taxid": 2735136, "relation_to_type": "type", "validated": true, "ani": 76.9091, "matched_fragments": 60, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium timonense", "strain": "strain=5401744", "accession": "GCA_000312345.1", "taxid": 441500, "species_taxid": 441500, "relation_to_type": "type", "validated": true, "ani": 76.835, "matched_fragments": 66, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium mycetoides", "strain": "strain=DSM 20632", "accession": "GCA_900103625.1", "taxid": 38302, "species_taxid": 38302, "relation_to_type": "type", "validated": true, "ani": 76.8102, "matched_fragments": 75, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium haemomassiliense", "strain": "strain=Marseille-Q3615", "accession": "GCA_013978595.1", "taxid": 2754726, "species_taxid": 2754726, "relation_to_type": "type", "validated": true, "ani": 76.8075, "matched_fragments": 67, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium ihumii", "strain": "strain=GD7", "accession": "GCA_000403725.2", "taxid": 1232427, "species_taxid": 1232427, "relation_to_type": "type", "validated": true, "ani": 76.8027, "matched_fragments": 67, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium timonense", "strain": "strain=DSM 45434", "accession": "GCA_900105305.1", "taxid": 441500, "species_taxid": 441500, "relation_to_type": "type", "validated": true, "ani": 76.7784, "matched_fragments": 67, "total_fragments": 625, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 96.41, "contamination": 0.0, 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