{ "type": "genome", "identifier": "GCA_905372475.1", "organism": "Propionibacteriaceae bacterium", "title": "Propionibacteriaceae bacterium", "description": "derived from metagenome; genus undefined", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905372475.1", "bioproject": "PRJEB43277", "biosample": "SAMEA8395181", "wgs_master": "CAJPPP000000000.1", "refseq_category": "na", "taxid": "2021380", "species_taxid": "2021380", "organism_name": "Propionibacteriaceae bacterium", "infraspecific_name": "", "isolate": "SRR9217422-mag-bin.6", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/26", "asm_name": "SRR9217422-mag-bin.6", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/475/GCA_905372475.1_SRR9217422-mag-bin.6", "excluded_from_refseq": "derived from metagenome; genus undefined", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-26", "dateModified": "2021-03-26", "datePublished": "2021-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Propionibacteriaceae bacterium" ], "sample_taxid": [ "2021380" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.878 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 85.62, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3115083", "Number of Sequences": "157", "Longest Sequences (bp)": "183587", "N50 (bp)": "35947", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.2", "Number of CDSs": "2718", "Average Protein Length": "324.6", "Coding Ratio (%)": "85.0", "Number of rRNAs": "0", "Number of tRNAs": "45", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arachnia rubra", "strain": "strain=SK-1", "accession": "GCA_019973735.1", "taxid": 1547448, "species_taxid": 1547448, "relation_to_type": "type", "validated": true, "ani": 99.2254, "matched_fragments": 930, "total_fragments": 960, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arachnia propionica", "strain": "strain=NCTC12967", "accession": "GCA_900637725.1", "taxid": 1750, "species_taxid": 1750, "relation_to_type": "type", "validated": true, "ani": 82.0945, "matched_fragments": 575, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arachnia propionica", "strain": "strain=NBRC 14587", "accession": "GCA_001592325.1", "taxid": 1750, "species_taxid": 1750, "relation_to_type": "type", "validated": true, "ani": 82.0817, "matched_fragments": 574, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pseudopropionibacterium] massiliense", "strain": "strain=Marseille-P6184", "accession": "GCA_900607225.1", "taxid": 2220000, "species_taxid": 2220000, "relation_to_type": "type", "validated": true, "ani": 81.7254, "matched_fragments": 557, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus rhinocerotis", "strain": "strain=YIM 101269", "accession": "GCA_007197885.1", "taxid": 1689449, "species_taxid": 1689449, "relation_to_type": "type", "validated": true, "ani": 77.6509, "matched_fragments": 203, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus lapidicaptus", "strain": "strain=IPBSL-7", "accession": "GCA_001693815.1", "taxid": 1427523, "species_taxid": 1427523, "relation_to_type": "type", "validated": true, "ani": 77.5775, "matched_fragments": 178, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus flavescens", "strain": "strain=SST-39T", "accession": "GCA_001998865.1", "taxid": 399497, "species_taxid": 399497, "relation_to_type": "type", "validated": true, "ani": 77.5516, "matched_fragments": 178, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus antarcticus", "strain": "strain=JDX10", "accession": "GCA_003688855.1", "taxid": 2479848, "species_taxid": 2479848, "relation_to_type": "type", "validated": true, "ani": 76.9973, "matched_fragments": 161, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariimicrobium ganziense", "strain": "strain=YIM S02566", "accession": "GCA_015352975.1", "taxid": 2773677, "species_taxid": 2773677, "relation_to_type": "type", "validated": true, "ani": 76.7101, "matched_fragments": 124, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Naumannella halotolerans", "strain": "strain=DSM 24323", "accession": "GCA_004364645.1", "taxid": 993414, "species_taxid": 993414, "relation_to_type": "type", "validated": true, "ani": 76.0159, "matched_fragments": 80, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oerskovia douganii", "strain": "strain=Sa1BUA8", "accession": "GCA_015142735.1", "taxid": 2762210, "species_taxid": 2762210, "relation_to_type": "type", "validated": true, "ani": 75.7996, "matched_fragments": 51, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus antarcticus", "strain": "strain=DSM 11053", "accession": "GCA_014193425.1", "taxid": 53388, "species_taxid": 53388, "relation_to_type": "type", "validated": true, "ani": 75.7117, "matched_fragments": 94, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides zhouii", "strain": "strain=HLT2-9", "accession": "GCA_004137345.1", "taxid": 1168729, "species_taxid": 1168729, "relation_to_type": "type", "validated": true, "ani": 75.6115, "matched_fragments": 84, "total_fragments": 960, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 85.62, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_018128325.1", "gtdb_species": "s__Arachnia rubra", "ani": 99.2349, "matched_fragments": 929, "total_fragments": 960, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "99.21", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 4, "status": 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