{ "type": "genome", "identifier": "GCA_905372505.1", "organism": "Selenomonas artemidis", "title": "Selenomonas artemidis", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905372505.1", "bioproject": "PRJEB43277", "biosample": "SAMEA8395185", "wgs_master": "CAJPPM000000000.1", "refseq_category": "na", "taxid": "671224", "species_taxid": "671224", "organism_name": "Selenomonas artemidis", "infraspecific_name": "", "isolate": "SRR9217423-mag-bin.5", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/26", "asm_name": "SRR9217423-mag-bin.5", "submitter": "EMG", "gbrs_paired_asm": "GCF_905372505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/505/GCA_905372505.1_SRR9217423-mag-bin.5", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-26", "dateModified": "2021-03-26", "datePublished": "2021-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Selenomonas artemidis" ], "sample_taxid": [ "671224" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.650 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2301587", "Number of Sequences": "42", "Longest Sequences (bp)": "173560", "N50 (bp)": "91968", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "57.1", "Number of CDSs": "2144", "Average Protein Length": "320.6", "Coding Ratio (%)": "89.6", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Selenomonas artemidis", "strain": "strain=DSM 19719", "accession": "GCA_000426665.1", "taxid": 671224, "species_taxid": 671224, "relation_to_type": "type", "validated": true, "ani": 97.6043, "matched_fragments": 659, "total_fragments": 744, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Selenomonas timonae", "strain": "strain=Marseille-Q3039", "accession": "GCA_014250475.1", "taxid": 2754044, "species_taxid": 2754044, "relation_to_type": "type", "validated": true, "ani": 80.6331, "matched_fragments": 419, "total_fragments": 744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Selenomonas noxia", "strain": "strain=ATCC 43541", "accession": "GCA_000160555.1", "taxid": 135083, "species_taxid": 135083, "relation_to_type": "type", "validated": true, "ani": 80.4158, "matched_fragments": 366, "total_fragments": 744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Selenomonas infelix", "strain": "strain=ATCC 43532", "accession": "GCA_000234095.1", "taxid": 135082, "species_taxid": 135082, "relation_to_type": "type", "validated": true, "ani": 80.224, "matched_fragments": 370, "total_fragments": 744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Selenomonas felix", "strain": "strain=Marseille-P3560", "accession": "GCA_900186465.1", "taxid": 1944634, "species_taxid": 1944634, "relation_to_type": "type", "validated": true, "ani": 80.0697, "matched_fragments": 344, "total_fragments": 744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Selenomonas flueggei", "strain": "strain=ATCC 43531", "accession": "GCA_000160695.1", "taxid": 135080, "species_taxid": 135080, "relation_to_type": "type", "validated": true, "ani": 79.6242, "matched_fragments": 327, "total_fragments": 744, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mitsuokella multacida", "strain": "strain=DSM 20544", "accession": "GCA_000155955.1", "taxid": 52226, "species_taxid": 52226, "relation_to_type": "type", "validated": true, "ani": 77.1019, "matched_fragments": 145, "total_fragments": 744, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000426665.1", "gtdb_species": "s__Centipeda artemidis", "ani": 97.6355, "matched_fragments": 658, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.37", "min_intra_species_ani": "96.69", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.87", "num_clustered_genomes": 7, "status": "conclusive" }, { "accession": "GCF_000315545.1", "gtdb_species": "s__Centipeda sp000315545", "ani": 84.4579, "matched_fragments": 525, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001683335.1", "gtdb_species": "s__Centipeda sp001683335", "ani": 80.6692, "matched_fragments": 442, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014250475.1", "gtdb_species": "s__Centipeda sp000318175", "ani": 80.6423, "matched_fragments": 418, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.58", "min_intra_species_ani": "96.58", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000160555.1", "gtdb_species": "s__Centipeda noxia", "ani": 80.4158, "matched_fragments": 366, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.53", "min_intra_species_ani": "98.32", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000286455.1", "gtdb_species": "s__Centipeda sp000286455", "ani": 80.3911, "matched_fragments": 402, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001717585.1", "gtdb_species": "s__Centipeda sp001717585", "ani": 80.2642, "matched_fragments": 373, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000234095.1", "gtdb_species": "s__Centipeda infelix", "ani": 80.2299, "matched_fragments": 370, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905372865.1", "gtdb_species": "s__Centipeda sp905372865", "ani": 80.1611, "matched_fragments": 373, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900186465.1", "gtdb_species": "s__Centipeda felix", "ani": 80.0687, "matched_fragments": 344, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.19", "min_intra_species_ani": "96.61", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.84", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_015265235.1", "gtdb_species": "s__Centipeda sp015265235", "ani": 79.8612, "matched_fragments": 313, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.78", "min_intra_species_ani": "96.35", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.81", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_000160695.1", "gtdb_species": "s__Centipeda flueggei", "ani": 79.6084, "matched_fragments": 328, "total_fragments": 744, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_C;c__Negativicutes;o__Selenomonadales;f__Selenomonadaceae;g__Centipeda", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": 0.113, "cell_length": 0.518, "doubling_h": 0.403, "growth_tmp": 40.0, "optimum_tmp": 42.0, "optimum_ph": 7.1, "genome_size": 2281033.5, "gc_content": 54.791, "coding_genes": 2841.5, "rRNA16S_genes": 5.5, "tRNA_genes": 62.5, "gram_stain": 1.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 1.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_C", "c__Negativicutes", "o__Selenomonadales", "f__Selenomonadaceae", "g__Centipeda", "s__Centipeda artemidis" ], "_genome_taxon": [ "Selenomonas", "artemidis", "d__Bacteria", "p__Bacillota_C", "c__Negativicutes", "o__Selenomonadales", "f__Selenomonadaceae", "g__Centipeda", "s__Centipeda artemidis", "Bacteria", "Bacillota", "C", "Negativicutes", "Selenomonadales", "Selenomonadaceae", "Centipeda", "Centipeda", "artemidis" ], "_meo": [ { "id": "MEO_0000467", "label": "oral cavity" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }