{
    "type": "genome",
    "identifier": "GCA_905372525.1",
    "organism": "uncultured Porphyromonas sp.",
    "title": "uncultured Porphyromonas sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_905372525.1",
        "bioproject": "PRJEB43277",
        "biosample": "SAMEA8395189",
        "wgs_master": "CAJPPN000000000.1",
        "refseq_category": "na",
        "taxid": "159274",
        "species_taxid": "159274",
        "organism_name": "uncultured Porphyromonas sp.",
        "infraspecific_name": "",
        "isolate": "SRR9217423-mag-bin.10",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/03/26",
        "asm_name": "SRR9217423-mag-bin.10",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/525/GCA_905372525.1_SRR9217423-mag-bin.10",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-03-26",
    "dateModified": "2021-03-26",
    "datePublished": "2021-03-26",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Porphyromonas sp."
        ],
        "sample_taxid": [
            "159274"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not provided"
        ],
        "sample_host_location_id": [],
        "data_size": "0.664 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2337749",
        "Number of Sequences": "74",
        "Longest Sequences (bp)": "127342",
        "N50 (bp)": "47120",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.6",
        "Number of CDSs": "1766",
        "Average Protein Length": "368.2",
        "Coding Ratio (%)": "83.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "41",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Porphyromonas catoniae",
                "strain": "strain=ATCC 51270",
                "accession": "GCA_000565015.1",
                "taxid": 41976,
                "species_taxid": 41976,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5929,
                "matched_fragments": 323,
                "total_fragments": 741,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Porphyromonas bobii",
                "strain": "strain=EMRHCC_6C",
                "accession": "GCA_943169685.1",
                "taxid": 2811780,
                "species_taxid": 2811780,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.284,
                "matched_fragments": 283,
                "total_fragments": 741,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Porphyromonas pasteri",
                "strain": "strain=JCM 30531",
                "accession": "GCA_014647755.1",
                "taxid": 1583331,
                "species_taxid": 1583331,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2278,
                "matched_fragments": 269,
                "total_fragments": 741,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_905372525.1",
                "gtdb_species": "s__Porphyromonas sp905372525",
                "ani": 100.0,
                "matched_fragments": 736,
                "total_fragments": 741,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000565015.1",
                "gtdb_species": "s__Porphyromonas catoniae",
                "ani": 82.6104,
                "matched_fragments": 322,
                "total_fragments": 741,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.79",
                "min_intra_species_ani": "96.79",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014647755.1",
                "gtdb_species": "s__Porphyromonas pasteri",
                "ani": 79.2278,
                "matched_fragments": 269,
                "total_fragments": 741,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.26",
                "min_intra_species_ani": "95.60",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 32,
                "status": "-"
            },
            {
                "accession": "GCF_000467855.2",
                "gtdb_species": "s__Porphyromonas sp000467855",
                "ani": 79.0526,
                "matched_fragments": 263,
                "total_fragments": 741,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.77",
                "min_intra_species_ani": "96.77",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_018127745.1",
                "gtdb_species": "s__Porphyromonas sp018127745",
                "ani": 79.0068,
                "matched_fragments": 269,
                "total_fragments": 741,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905372565.1",
                "gtdb_species": "s__Porphyromonas sp905372565",
                "ani": 78.6436,
                "matched_fragments": 172,
                "total_fragments": 741,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Porphyromonadaceae;g__Porphyromonas",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.78",
                "min_intra_species_ani": "96.78",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.346,
        "cell_length": 0.057,
        "doubling_h": 0.809,
        "growth_tmp": 37.0,
        "optimum_tmp": 36.694,
        "optimum_ph": 7.825,
        "genome_size": 2392756.682,
        "gc_content": 47.952,
        "coding_genes": 1811.644,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 52.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Porphyromonadaceae",
        "g__Porphyromonas",
        "s__Porphyromonas sp905372525"
    ],
    "_genome_taxon": [
        "uncultured",
        "Porphyromonas",
        "sp.",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Porphyromonadaceae",
        "g__Porphyromonas",
        "s__Porphyromonas sp905372525",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Porphyromonadaceae",
        "Porphyromonas",
        "Porphyromonas",
        "sp905372525"
    ],
    "_meo": [
        {
            "id": "MEO_0000467",
            "label": "oral cavity"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}