{ "type": "genome", "identifier": "GCA_905372535.1", "organism": "Capnocytophaga leadbetteri", "title": "Capnocytophaga leadbetteri", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905372535.1", "bioproject": "PRJEB43277", "biosample": "SAMEA8395165", "wgs_master": "CAJPPO000000000.1", "refseq_category": "na", "taxid": "327575", "species_taxid": "327575", "organism_name": "Capnocytophaga leadbetteri", "infraspecific_name": "", "isolate": "SRR9217414-mag-bin.5", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/26", "asm_name": "SRR9217414-mag-bin.5", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/535/GCA_905372535.1_SRR9217414-mag-bin.5", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-26", "dateModified": "2021-03-26", "datePublished": "2021-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Capnocytophaga leadbetteri" ], "sample_taxid": [ "327575" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.736 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2591175", "Number of Sequences": "157", "Longest Sequences (bp)": "79358", "N50 (bp)": "26443", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.1", "Number of CDSs": "2276", "Average Protein Length": "331.9", "Coding Ratio (%)": "87.5", "Number of rRNAs": "0", "Number of tRNAs": "32", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Capnocytophaga leadbetteri", "strain": "strain=DSM 22902", "accession": "GCA_003054025.1", "taxid": 327575, "species_taxid": 327575, "relation_to_type": "type", "validated": true, "ani": 95.3264, "matched_fragments": 687, "total_fragments": 789, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Capnocytophaga bilenii", "strain": "strain=Marseille-Q4570", "accession": "GCA_017565765.1", "taxid": 2819369, "species_taxid": 2819369, "relation_to_type": "type", "validated": true, "ani": 81.1423, "matched_fragments": 331, "total_fragments": 789, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga endodontalis", "strain": "strain=ChDC OS43", "accession": "GCA_002209445.1", "taxid": 2708117, "species_taxid": 2708117, "relation_to_type": "type", "validated": true, "ani": 80.7642, "matched_fragments": 419, "total_fragments": 789, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga periodontitidis", "strain": "strain=p1a2", "accession": "GCA_016126015.1", "taxid": 2795027, "species_taxid": 2795027, "relation_to_type": "type", "validated": true, "ani": 80.7505, "matched_fragments": 407, "total_fragments": 789, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga sputigena", "strain": "strain=NCTC11653", "accession": "GCA_900446695.1", "taxid": 1019, "species_taxid": 1019, "relation_to_type": "type", "validated": true, "ani": 80.3821, "matched_fragments": 406, "total_fragments": 789, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga ochracea", "strain": "strain=FDAARGOS_1468", "accession": "GCA_019930725.1", "taxid": 1018, "species_taxid": 1018, "relation_to_type": "type", "validated": true, "ani": 79.8799, "matched_fragments": 339, "total_fragments": 789, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga ochracea", "strain": "strain=DSM 7271", "accession": "GCA_000023285.1", "taxid": 1018, "species_taxid": 1018, "relation_to_type": "type", "validated": true, "ani": 79.8745, "matched_fragments": 339, "total_fragments": 789, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Capnocytophaga cynodegmi", "strain": "strain=E6447", "accession": "GCA_000379185.1", "taxid": 28189, "species_taxid": 28189, "relation_to_type": "type", "validated": true, "ani": 76.1747, "matched_fragments": 55, "total_fragments": 789, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_003054025.1", "gtdb_species": "s__Capnocytophaga leadbetteri", "ani": 95.3264, "matched_fragments": 687, 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