{ "type": "genome", "identifier": "GCA_905372545.1", "organism": "Neisseria sp. oral taxon 014", "title": "Neisseria sp. oral taxon 014", "description": "contaminated; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905372545.1", "bioproject": "PRJEB43277", "biosample": "SAMEA8395176", "wgs_master": "CAJPPI000000000.1", "refseq_category": "na", "taxid": "641148", "species_taxid": "641148", "organism_name": "Neisseria sp. oral taxon 014", "infraspecific_name": "", "isolate": "SRR9217415-mag-bin.5", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/26", "asm_name": "SRR9217415-mag-bin.5", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/545/GCA_905372545.1_SRR9217415-mag-bin.5", "excluded_from_refseq": "contaminated; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-26", "dateModified": "2021-03-26", "datePublished": "2021-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria sp. oral taxon 014" ], "sample_taxid": [ "641148" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.691 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.22, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2461449", "Number of Sequences": "21", "Longest Sequences (bp)": "283138", "N50 (bp)": "181381", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.6", "Number of CDSs": "2236", "Average Protein Length": "309.9", "Coding Ratio (%)": "84.4", "Number of rRNAs": "0", "Number of tRNAs": "50", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_000813705.1", "taxid": 1056807, "species_taxid": 1056807, "relation_to_type": "type", "validated": true, "ani": 87.9101, "matched_fragments": 449, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria sicca", "strain": "strain=DSM 17713", "accession": "GCA_014054945.1", "taxid": 490, "species_taxid": 490, "relation_to_type": "suspected-type", "validated": true, "ani": 87.837, "matched_fragments": 526, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria sicca", "strain": "strain=ATCC 29256", "accession": "GCA_000174655.1", "taxid": 490, "species_taxid": 490, "relation_to_type": "suspected-type", "validated": true, "ani": 87.8312, "matched_fragments": 524, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_022749515.1", "taxid": 1056807, "species_taxid": 1056807, "relation_to_type": "type", "validated": true, "ani": 87.8257, "matched_fragments": 486, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria cinerea", "strain": "strain=CCUG 2156", "accession": "GCA_021025975.1", "taxid": 483, "species_taxid": 483, "relation_to_type": "type", "validated": true, "ani": 84.8959, "matched_fragments": 364, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria elongata", "strain": "strain=NCTC10660", "accession": "GCA_900453895.1", "taxid": 495, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 84.5509, "matched_fragments": 392, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria elongata subsp. glycolytica", "strain": "strain=ATCC 29315", "accession": "GCA_000818035.1", "taxid": 88719, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 84.4472, "matched_fragments": 377, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria elongata subsp. elongata", "strain": "strain=ATCC 25295", "accession": "GCA_900113545.1", "taxid": 214482, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 84.3746, "matched_fragments": 388, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria meningitidis", "strain": "strain=PartJ-Nmeningitidis-RM8376", "accession": "GCA_022869645.1", "taxid": 487, "species_taxid": 487, "relation_to_type": "type", "validated": true, "ani": 84.3197, "matched_fragments": 395, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria elongata subsp. glycolytica", "strain": "strain=NCTC11050", "accession": "GCA_900475815.1", "taxid": 88719, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 84.1615, "matched_fragments": 386, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria perflava", "strain": "strain=CCUG 17915", "accession": "GCA_023472875.1", "taxid": 33053, "species_taxid": 33053, "relation_to_type": "suspected-type", "validated": true, "ani": 82.8985, "matched_fragments": 424, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bergeriella denitrificans", "strain": "strain=NBRC 102155", "accession": "GCA_001592185.1", "taxid": 494, "species_taxid": 494, "relation_to_type": "type", "validated": true, "ani": 80.7116, "matched_fragments": 352, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bergeriella denitrificans", "strain": "strain=NCTC10295", "accession": "GCA_900453875.1", "taxid": 494, "species_taxid": 494, "relation_to_type": "type", "validated": true, "ani": 80.622, "matched_fragments": 434, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dentiae", "strain": "strain=DSM 19151", "accession": "GCA_002108595.1", "taxid": 194197, "species_taxid": 194197, "relation_to_type": "type", "validated": true, "ani": 79.9443, "matched_fragments": 401, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dentiae", "strain": "strain=NCTC13012", "accession": "GCA_900453685.1", "taxid": 194197, "species_taxid": 194197, "relation_to_type": "type", "validated": true, "ani": 79.8248, "matched_fragments": 420, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dentiae", "strain": "strain=DSM 19151", "accession": "GCA_014055005.1", "taxid": 194197, "species_taxid": 194197, "relation_to_type": "type", "validated": true, "ani": 79.7974, "matched_fragments": 426, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uruburuella testudinis", "strain": "strain=CCUG 63373m", "accession": "GCA_022870865.1", "taxid": 1282863, "species_taxid": 1282863, "relation_to_type": "type", "validated": true, "ani": 78.2757, "matched_fragments": 385, "total_fragments": 811, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 97.22, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_005886145.1", "gtdb_species": "s__Neisseria sp000090875", "ani": 97.3955, "matched_fragments": 763, "total_fragments": 811, "gtdb_taxonomy": 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