{ "type": "genome", "identifier": "GCA_905372575.1", "organism": "Arachnia propionica", "title": "Arachnia propionica", "description": "derived from metagenome; genome length too small", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905372575.1", "bioproject": "PRJEB43277", "biosample": "SAMEA8395183", "wgs_master": "CAJPPU000000000.1", "refseq_category": "na", "taxid": "1750", "species_taxid": "1750", "organism_name": "Arachnia propionica", "infraspecific_name": "", "isolate": "SRR9217422-mag-bin.11", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/26", "asm_name": "SRR9217422-mag-bin.11", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/575/GCA_905372575.1_SRR9217422-mag-bin.11", "excluded_from_refseq": "derived from metagenome; genome length too small", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-26", "dateModified": "2021-03-26", "datePublished": "2021-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Arachnia propionica" ], "sample_taxid": [ "1750" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.758 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 57.29, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2727251", "Number of Sequences": "393", "Longest Sequences (bp)": "34974", "N50 (bp)": "7988", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.3", "Number of CDSs": "2232", "Average Protein Length": "307.5", "Coding Ratio (%)": "75.5", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Arachnia propionica", "strain": "strain=NBRC 14587", "accession": "GCA_001592325.1", "taxid": 1750, "species_taxid": 1750, "relation_to_type": "type", "validated": true, "ani": 98.8911, "matched_fragments": 681, "total_fragments": 715, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Arachnia propionica", "strain": "strain=NCTC12967", "accession": "GCA_900637725.1", "taxid": 1750, "species_taxid": 1750, "relation_to_type": "type", "validated": true, "ani": 98.8243, "matched_fragments": 689, "total_fragments": 715, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "[Pseudopropionibacterium] massiliense", "strain": "strain=Marseille-P6184", "accession": "GCA_900607225.1", "taxid": 2220000, "species_taxid": 2220000, "relation_to_type": "type", "validated": true, "ani": 90.5478, "matched_fragments": 584, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arachnia rubra", "strain": "strain=SK-1", "accession": "GCA_019973735.1", "taxid": 1547448, "species_taxid": 1547448, "relation_to_type": "type", "validated": true, "ani": 81.577, "matched_fragments": 409, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus rhinocerotis", "strain": "strain=YIM 101269", "accession": "GCA_007197885.1", "taxid": 1689449, "species_taxid": 1689449, "relation_to_type": "type", "validated": true, "ani": 77.8547, "matched_fragments": 181, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus lapidicaptus", "strain": "strain=IPBSL-7", "accession": "GCA_001693815.1", "taxid": 1427523, "species_taxid": 1427523, "relation_to_type": "type", "validated": true, "ani": 77.7658, "matched_fragments": 161, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tessaracoccus antarcticus", "strain": "strain=JDX10", "accession": "GCA_003688855.1", "taxid": 2479848, "species_taxid": 2479848, "relation_to_type": "type", "validated": true, "ani": 77.6551, "matched_fragments": 152, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava sinopodophylli", "strain": "strain=KCTC 33808", "accession": "GCA_004324755.1", "taxid": 1837344, "species_taxid": 1837344, "relation_to_type": "type", "validated": true, "ani": 77.3726, "matched_fragments": 103, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Propioniciclava soli", "strain": "strain=YIM S02567", "accession": "GCA_014858005.1", "taxid": 2775081, "species_taxid": 2775081, "relation_to_type": "type", "validated": true, "ani": 76.7495, "matched_fragments": 103, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microlunatus antarcticus", "strain": "strain=DSM 11053", "accession": "GCA_014193425.1", "taxid": 53388, "species_taxid": 53388, "relation_to_type": "type", "validated": true, "ani": 76.2088, "matched_fragments": 92, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides panacis", "strain": "strain=G188", "accession": "GCA_019039255.1", "taxid": 2849501, "species_taxid": 2849501, "relation_to_type": "type", "validated": true, "ani": 76.0678, "matched_fragments": 90, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardioides furvisabuli", "strain": "strain=JCM 13813", "accession": "GCA_021083185.1", "taxid": 375542, "species_taxid": 375542, "relation_to_type": "type", "validated": true, "ani": 75.8184, "matched_fragments": 82, "total_fragments": 715, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 57.29, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900637725.1", "gtdb_species": "s__Arachnia propionica", "ani": 98.8243, "matched_fragments": 689, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.87", "min_intra_species_ani": "97.26", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.91", "num_clustered_genomes": 9, "status": "conclusive" }, { "accession": "GCA_905372155.1", "gtdb_species": "s__Arachnia sp905372155", "ani": 93.4586, "matched_fragments": 571, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900607225.1", "gtdb_species": "s__Arachnia sp900607225", "ani": 90.5518, "matched_fragments": 584, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013333945.2", "gtdb_species": "s__Arachnia sp013333945", "ani": 87.903, "matched_fragments": 497, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018128325.1", "gtdb_species": "s__Arachnia rubra", "ani": 81.6983, "matched_fragments": 397, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.26", "min_intra_species_ani": "99.21", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003859805.1", "gtdb_species": "s__Arachnia propionica_C", "ani": 79.0322, "matched_fragments": 279, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003932785.1", "gtdb_species": "s__Arachnia propionica_B", "ani": 78.6202, "matched_fragments": 267, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007197885.1", "gtdb_species": "s__Arachnia rhinocerotis", "ani": 77.849, "matched_fragments": 180, "total_fragments": 715, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Propionibacteriales;f__Propionibacteriaceae;g__Arachnia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Propionibacteriales", "f__Propionibacteriaceae", "g__Arachnia", "s__Arachnia propionica" ], "_genome_taxon": [ "Arachnia", "propionica", "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Propionibacteriales", "f__Propionibacteriaceae", "g__Arachnia", "s__Arachnia propionica", "Bacteria", "Actinomycetota", "Actinomycetes", "Propionibacteriales", "Propionibacteriaceae", "Arachnia", "Arachnia", "propionica" ], "_meo": [ { "id": "MEO_0000467", "label": "oral cavity" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }