{ "type": "genome", "identifier": "GCA_905372985.1", "organism": "Prevotella nigrescens", "title": "Prevotella nigrescens", "description": "derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905372985.1", "bioproject": "PRJEB43277", "biosample": "SAMEA8395233", "wgs_master": "CAJPQZ000000000.1", "refseq_category": "na", "taxid": "28133", "species_taxid": "28133", "organism_name": "Prevotella nigrescens", "infraspecific_name": "", "isolate": "SRR9217449-mag-bin.15", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/03/26", "asm_name": "SRR9217449-mag-bin.15", "submitter": "EMG", "gbrs_paired_asm": "GCF_905372985.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/372/985/GCA_905372985.1_SRR9217449-mag-bin.15", "excluded_from_refseq": "derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-03-26", "dateModified": "2021-03-26", "datePublished": "2021-03-26", "_annotation": { "sample_count": 1, "sample_organism": [ "Prevotella nigrescens" ], "sample_taxid": [ "28133" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.714 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 2.08, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2490701", "Number of Sequences": "92", "Longest Sequences (bp)": "115048", "N50 (bp)": "44060", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.5", "Number of CDSs": "1957", "Average Protein Length": "348.8", "Coding Ratio (%)": "82.2", "Number of rRNAs": "0", "Number of tRNAs": "30", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Prevotella nigrescens", "strain": "strain=ATCC 33563", "accession": "GCA_000220235.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 98.3681, "matched_fragments": 719, "total_fragments": 781, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=NCTC9336", "accession": "GCA_900454985.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 98.3084, "matched_fragments": 724, "total_fragments": 781, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella nigrescens", "strain": "strain=FDAARGOS_1486", "accession": "GCA_019930605.1", "taxid": 28133, "species_taxid": 28133, "relation_to_type": "type", "validated": true, "ani": 98.2937, "matched_fragments": 726, "total_fragments": 781, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Prevotella intermedia", "strain": "strain=DSM 20706", "accession": "GCA_000439065.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 86.0449, "matched_fragments": 535, "total_fragments": 781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella intermedia", "strain": "strain=ATCC 25611", "accession": "GCA_000519165.1", "taxid": 28131, "species_taxid": 28131, "relation_to_type": "type", "validated": true, "ani": 86.0277, "matched_fragments": 542, "total_fragments": 781, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella pallens", "strain": "strain=DSM 18710", "accession": "GCA_003269195.1", "taxid": 60133, "species_taxid": 60133, "relation_to_type": "type", "validated": true, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Prevotella vespertina", "strain": "strain=A2879", "accession": "GCA_009728485.1", "taxid": 2608404, "species_taxid": 2608404, "relation_to_type": "type", "validated": true, "ani": 77.2746, "matched_fragments": 79, "total_fragments": 781, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 2.08, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000220235.1", "gtdb_species": "s__Prevotella nigrescens", "ani": 98.3681, "matched_fragments": 719, "total_fragments": 781, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.14", "min_intra_species_ani": "97.70", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.78", "num_clustered_genomes": 13, "status": "conclusive" }, { "accession": "GCF_001953955.1", 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