{
    "type": "genome",
    "identifier": "GCA_905477485.1",
    "organism": "uncultured Flavobacteriaceae bacterium",
    "title": "uncultured Flavobacteriaceae bacterium",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_905477485.1",
        "bioproject": "PRJEB38290",
        "biosample": "SAMEA8498384",
        "wgs_master": "CAJQGE000000000.1",
        "refseq_category": "na",
        "taxid": "165436",
        "species_taxid": "165436",
        "organism_name": "uncultured Flavobacteriaceae bacterium",
        "infraspecific_name": "",
        "isolate": "0.2_20180319_Bin_12",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/15",
        "asm_name": "0.2_20180319_Bin_12",
        "submitter": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/477/485/GCA_905477485.1_0.2_20180319_Bin_12",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-15",
    "dateModified": "2021-04-15",
    "datePublished": "2021-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Flavobacteriaceae bacterium"
        ],
        "sample_taxid": [
            "165436"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "North Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.432 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1555352",
        "Number of Sequences": "97",
        "Longest Sequences (bp)": "94608",
        "N50 (bp)": "32067",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "29.4",
        "Number of CDSs": "1332",
        "Average Protein Length": "339.8",
        "Coding Ratio (%)": "87.3",
        "Number of rRNAs": "5",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Aquimarina muelleri",
                "strain": "strain=KCTC 12285",
                "accession": "GCA_014651355.1",
                "taxid": 279356,
                "species_taxid": 279356,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1506,
                "matched_fragments": 50,
                "total_fragments": 469,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lutibacter oceani",
                "strain": "strain=JCM30924",
                "accession": "GCA_003426875.1",
                "taxid": 1853311,
                "species_taxid": 1853311,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0984,
                "matched_fragments": 54,
                "total_fragments": 469,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lutibacter oceani",
                "strain": "strain=325-5",
                "accession": "GCA_003384935.1",
                "taxid": 1853311,
                "species_taxid": 1853311,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.0821,
                "matched_fragments": 56,
                "total_fragments": 469,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Lutibacter citreus",
                "strain": "strain=1KV19",
                "accession": "GCA_003260195.1",
                "taxid": 2138210,
                "species_taxid": 2138210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 75.9786,
                "matched_fragments": 68,
                "total_fragments": 469,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_002700465.1",
                "gtdb_species": "s__MAG-121220-bin8 sp002700465",
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                "matched_fragments": 286,
                "total_fragments": 469,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MAG-121220-bin8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.15",
                "min_intra_species_ani": "98.67",
                "mean_intra_species_af": "0.80",
                "min_intra_species_af": "0.80",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902510655.1",
                "gtdb_species": "s__MAG-121220-bin8 sp902510655",
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                "matched_fragments": 271,
                "total_fragments": 469,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MAG-121220-bin8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905479415.1",
                "gtdb_species": "s__MAG-121220-bin8 sp905479415",
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                "matched_fragments": 353,
                "total_fragments": 469,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MAG-121220-bin8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.94",
                "min_intra_species_ani": "98.70",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.77",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCA_018662905.1",
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                "matched_fragments": 224,
                "total_fragments": 469,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MAG-121220-bin8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.06",
                "min_intra_species_ani": "99.06",
                "mean_intra_species_af": "0.75",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_905182765.1",
                "gtdb_species": "s__MAG-121220-bin8 sp905182765",
                "ani": 83.958,
                "matched_fragments": 359,
                "total_fragments": 469,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MAG-121220-bin8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_902559035.1",
                "gtdb_species": "s__MAG-121220-bin8 sp902559035",
                "ani": 80.2729,
                "matched_fragments": 280,
                "total_fragments": 469,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MAG-121220-bin8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.40",
                "min_intra_species_ani": "96.04",
                "mean_intra_species_af": "0.82",
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                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCA_902635895.1",
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                "matched_fragments": 207,
                "total_fragments": 469,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MAG-121220-bin8",
                "ani_circumscription_radius": 95.0,
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                "mean_intra_species_af": "0.70",
                "min_intra_species_af": "0.70",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_016780345.1",
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                "matched_fragments": 198,
                "total_fragments": 469,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MAG-121220-bin8",
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                "mean_intra_species_ani": "99.67",
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            },
            {
                "accession": "GCA_004214185.1",
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                "matched_fragments": 222,
                "total_fragments": 469,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MAG-121220-bin8",
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                "mean_intra_species_ani": "96.26",
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            },
            {
                "accession": "GCA_012959395.1",
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                "matched_fragments": 189,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MAG-121220-bin8",
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                "mean_intra_species_ani": "97.96",
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                "num_clustered_genomes": 13,
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            },
            {
                "accession": "GCA_905181625.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__MAG-121220-bin8",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.335,
        "cell_length": 0.307,
        "doubling_h": 1.285,
        "growth_tmp": 26.48,
        "optimum_tmp": 26.613,
        "optimum_ph": 7.273,
        "genome_size": 3914984.758,
        "gc_content": 35.899,
        "coding_genes": 3178.027,
        "rRNA16S_genes": 3.891,
        "tRNA_genes": 50.834,
        "gram_stain": 0.0,
        "sporulation": 0.007,
        "motility": 0.361,
        "range_salinity": 0.615,
        "facultative_respiration": 0.043,
        "anaerobic_respiration": 0.012,
        "aerobic_respiration": 0.944,
        "mesophilic_range_tmp": 0.895,
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        "bacillus_cell_shape": 0.984,
        "coccus_cell_shape": 0.005,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.01,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
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        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Flavobacteriales",
        "f__Flavobacteriaceae",
        "g__MAG-121220-bin8",
        "s__MAG-121220-bin8 sp002700465"
    ],
    "_genome_taxon": [
        "uncultured",
        "Flavobacteriaceae",
        "bacterium",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Flavobacteriales",
        "f__Flavobacteriaceae",
        "g__MAG-121220-bin8",
        "s__MAG-121220-bin8 sp002700465",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Flavobacteriales",
        "Flavobacteriaceae",
        "MAG-121220-bin8",
        "MAG-121220-bin8",
        "sp002700465"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}