{ "type": "genome", "identifier": "GCA_905479135.1", "organism": "uncultured Campylobacterales bacterium", "title": "uncultured Campylobacterales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905479135.1", "bioproject": "PRJEB38290", "biosample": "SAMEA8498494", "wgs_master": "CAJQLJ000000000.1", "refseq_category": "na", "taxid": "352960", "species_taxid": "352960", "organism_name": "uncultured Campylobacterales bacterium", "infraspecific_name": "", "isolate": "0.2_20180522_Bin_122_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/15", "asm_name": "0.2_20180522_Bin_122_1", "submitter": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/479/135/GCA_905479135.1_0.2_20180522_Bin_122_1", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-15", "dateModified": "2021-04-15", "datePublished": "2021-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Campylobacterales bacterium" ], "sample_taxid": [ "352960" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "North Sea" ], "sample_host_location_id": [], "data_size": "0.415 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1523069", "Number of Sequences": "125", "Longest Sequences (bp)": "67861", "N50 (bp)": "18884", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "27.7", "Number of CDSs": "1498", "Average Protein Length": "290.4", "Coding Ratio (%)": "85.7", "Number of rRNAs": "0", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Poseidonibacter lekithochrous", "strain": "strain=DSM 100870", "accession": "GCA_013283835.1", "taxid": 1904463, "species_taxid": 1904463, "relation_to_type": "type", "validated": true, "ani": 80.6916, "matched_fragments": 309, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Poseidonibacter lekithochrous", "strain": "strain=LFT 1.7", "accession": "GCA_001878855.1", "taxid": 1904463, "species_taxid": 1904463, "relation_to_type": "type", "validated": true, "ani": 80.5888, "matched_fragments": 310, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter acticola", "strain": "strain=KCTC 52212", "accession": "GCA_013177675.1", "taxid": 1849015, "species_taxid": 1849015, "relation_to_type": "type", "validated": true, "ani": 80.2174, "matched_fragments": 318, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter venerupis", "strain": "strain=LMG 26156", "accession": "GCA_013201665.1", "taxid": 1054033, "species_taxid": 1054033, "relation_to_type": "type", "validated": true, "ani": 79.9956, "matched_fragments": 286, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter suis", "strain": "strain=CECT7833", "accession": "GCA_004023465.1", "taxid": 1278212, "species_taxid": 1278212, "relation_to_type": "type", "validated": true, "ani": 79.9068, "matched_fragments": 289, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter suis", "strain": "strain=CECT 7833", "accession": "GCA_003544815.1", "taxid": 1278212, "species_taxid": 1278212, "relation_to_type": "type", "validated": true, "ani": 79.8875, "matched_fragments": 293, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter venerupis", "strain": "strain=CECT7836", "accession": "GCA_004023405.1", "taxid": 1054033, "species_taxid": 1054033, "relation_to_type": "type", "validated": true, "ani": 79.8719, "matched_fragments": 287, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter pacificus", "strain": "strain=CGMCC 1.11011", "accession": "GCA_014636355.1", "taxid": 1080223, "species_taxid": 1080223, "relation_to_type": "type", "validated": true, "ani": 79.8138, "matched_fragments": 287, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter pacificus", "strain": "strain=LMG 26638", "accession": "GCA_004214795.1", "taxid": 1080223, "species_taxid": 1080223, "relation_to_type": "type", "validated": true, "ani": 79.7853, "matched_fragments": 290, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter defluvii", "strain": "strain=CECT 7697", "accession": "GCA_004115775.1", "taxid": 873191, "species_taxid": 873191, "relation_to_type": "type", "validated": true, "ani": 79.6717, "matched_fragments": 289, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter aquimarinus", "strain": "strain=CECT 8442", "accession": "GCA_004115795.1", "taxid": 1315211, "species_taxid": 1315211, "relation_to_type": "type", "validated": true, "ani": 79.6354, "matched_fragments": 295, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arcobacter aquimarinus", "strain": "strain=W63", "accession": "GCA_013177635.1", "taxid": 1315211, "species_taxid": 1315211, "relation_to_type": "type", "validated": true, "ani": 79.63, "matched_fragments": 289, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter butzleri", "strain": "strain=RM4018", "accession": "GCA_000014025.1", "taxid": 28197, "species_taxid": 28197, "relation_to_type": "type", "validated": true, "ani": 79.2612, "matched_fragments": 233, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter butzleri", "strain": "strain=NCTC 12481", "accession": "GCA_900187115.1", "taxid": 28197, "species_taxid": 28197, "relation_to_type": "type", "validated": true, "ani": 79.2214, "matched_fragments": 235, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aliarcobacter butzleri", "strain": "strain=LMG 10828", "accession": "GCA_024584145.1", "taxid": 28197, "species_taxid": 28197, "relation_to_type": "type", "validated": true, "ani": 79.1937, "matched_fragments": 236, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter mytili", "strain": "strain=LMG 24559", "accession": "GCA_003346775.1", "taxid": 603050, "species_taxid": 603050, "relation_to_type": "type", "validated": true, "ani": 79.0821, "matched_fragments": 248, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter molluscorum", "strain": "strain=F98-3", "accession": "GCA_002701265.1", "taxid": 1032072, "species_taxid": 1032072, "relation_to_type": "type", "validated": true, "ani": 79.0703, "matched_fragments": 232, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Malaciobacter molluscorum", "strain": "strain=CECT 7696", "accession": "GCA_003544935.1", "taxid": 1032072, "species_taxid": 1032072, "relation_to_type": "type", "validated": true, "ani": 79.0062, "matched_fragments": 238, "total_fragments": 448, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_905479135.1", "gtdb_species": "s__Poseidonibacter sp905479135", "ani": 100.0, "matched_fragments": 444, "total_fragments": 448, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_009208075.1", "gtdb_species": "s__Poseidonibacter sp009208075", "ani": 87.3412, "matched_fragments": 396, "total_fragments": 448, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.63", "min_intra_species_ani": "99.63", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018861145.1", "gtdb_species": "s__Poseidonibacter lekithochrous_A", "ani": 85.7996, "matched_fragments": 400, "total_fragments": 448, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002685075.1", "gtdb_species": "s__Poseidonibacter sp002685075", "ani": 84.8145, "matched_fragments": 336, "total_fragments": 448, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001956695.1", "gtdb_species": "s__Poseidonibacter parvus", "ani": 83.8736, "matched_fragments": 375, "total_fragments": 448, "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Arcobacteraceae;g__Poseidonibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "98.33", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003667345.1", "gtdb_species": "s__Poseidonibacter antarcticus", "ani": 83.1672, "matched_fragments": 371, "total_fragments": 448, "gtdb_taxonomy": 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"coccobacillus_cell_shape": 0.017, "vibrio_cell_shape": 0.087, "spiral_cell_shape": 0.526 }, "_gtdb_taxon": [ "d__Bacteria", "p__Campylobacterota", "c__Campylobacteria", "o__Campylobacterales", "f__Arcobacteraceae", "g__Poseidonibacter", "s__Poseidonibacter sp905479135" ], "_genome_taxon": [ "uncultured", "Campylobacterales", "bacterium", "d__Bacteria", "p__Campylobacterota", "c__Campylobacteria", "o__Campylobacterales", "f__Arcobacteraceae", "g__Poseidonibacter", "s__Poseidonibacter sp905479135", "Bacteria", "Campylobacterota", "Campylobacteria", "Campylobacterales", "Arcobacteraceae", "Poseidonibacter", "Poseidonibacter", "sp905479135" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }