{ "type": "genome", "identifier": "GCA_905479725.1", "organism": "uncultured Rhodobacteraceae bacterium", "title": "uncultured Rhodobacteraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905479725.1", "bioproject": "PRJEB38290", "biosample": "SAMEA8498619", "wgs_master": "CAJQNQ000000000.1", "refseq_category": "na", "taxid": "157276", "species_taxid": "157276", "organism_name": "uncultured Rhodobacteraceae bacterium", "infraspecific_name": "", "isolate": "10_20180412_Bin_METABAT_70_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/15", "asm_name": "10_20180412_Bin_METABAT_70_1", "submitter": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/479/725/GCA_905479725.1_10_20180412_Bin_METABAT_70_1", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-15", "dateModified": "2021-04-15", "datePublished": "2021-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Rhodobacteraceae bacterium" ], "sample_taxid": [ "157276" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "North Sea" ], "sample_host_location_id": [], "data_size": "0.656 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 71.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2360943", "Number of Sequences": "339", "Longest Sequences (bp)": "42521", "N50 (bp)": "8286", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.2", "Number of CDSs": "1997", "Average Protein Length": "300.5", "Coding Ratio (%)": "76.2", "Number of rRNAs": "0", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pararhodobacter marinus", "strain": "strain=CIC4N-9", "accession": "GCA_003122215.1", "taxid": 2184063, "species_taxid": 2184063, "relation_to_type": "type", "validated": true, "ani": 79.6227, "matched_fragments": 371, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodobacter aggregans", "strain": "strain=DSM 18938", "accession": "GCA_003054005.1", "taxid": 404875, "species_taxid": 404875, "relation_to_type": "type", "validated": true, "ani": 79.4042, "matched_fragments": 378, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodobacter aggregans", "strain": "strain=D1-19", "accession": "GCA_003075525.1", "taxid": 404875, "species_taxid": 404875, "relation_to_type": "type", "validated": true, "ani": 79.3377, "matched_fragments": 380, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodobacter oceanensis", "strain": "strain=AM505", "accession": "GCA_003076755.1", "taxid": 2172121, "species_taxid": 2172121, "relation_to_type": "type", "validated": true, "ani": 78.9934, "matched_fragments": 339, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodobacter zhoushanensis", "strain": "strain=ZQ420", "accession": "GCA_003990445.1", "taxid": 2479545, "species_taxid": 2479545, "relation_to_type": "type", "validated": true, "ani": 78.9192, "matched_fragments": 371, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhabdonatronobacter sediminivivens", "strain": "strain=IM2376", "accession": "GCA_013415485.1", "taxid": 2743469, "species_taxid": 2743469, "relation_to_type": "type", "validated": true, "ani": 77.8512, "matched_fragments": 231, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salipiger marinus", "strain": "strain=DSM 26424", "accession": "GCA_900100085.1", "taxid": 555512, "species_taxid": 555512, "relation_to_type": "type", "validated": true, "ani": 77.719, "matched_fragments": 224, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus yeei", "strain": "strain=ATCC BAA-599", "accession": "GCA_000622145.1", "taxid": 147645, "species_taxid": 147645, "relation_to_type": "type", "validated": true, "ani": 77.6255, "matched_fragments": 186, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paracoccus yeei", "strain": "strain=G1212", "accession": "GCA_002196965.1", "taxid": 147645, "species_taxid": 147645, "relation_to_type": "type", "validated": true, "ani": 77.5968, "matched_fragments": 181, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodovulum steppense", "strain": "strain=DSM 21153", "accession": "GCA_004339675.1", "taxid": 540251, "species_taxid": 540251, "relation_to_type": "type", "validated": true, "ani": 77.5674, "matched_fragments": 198, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola algicola", "strain": "strain=ETT8", "accession": "GCA_010915705.1", "taxid": 2709381, "species_taxid": 2709381, "relation_to_type": "type", "validated": true, "ani": 77.4661, "matched_fragments": 178, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cereibacter sediminicola", "strain": "strain=JA983", "accession": "GCA_007668225.1", "taxid": 2584941, "species_taxid": 2584941, "relation_to_type": "type", "validated": true, "ani": 77.4608, "matched_fragments": 172, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola alkalilacus", "strain": "strain=DJC", "accession": "GCA_003443995.1", "taxid": 2305252, "species_taxid": 2305252, "relation_to_type": "type", "validated": true, "ani": 77.0132, "matched_fragments": 175, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tabrizicola sediminis", "strain": "strain=DRYC-M-16", "accession": "GCA_004745575.1", "taxid": 2486418, "species_taxid": 2486418, "relation_to_type": "type", "validated": true, "ani": 76.9311, "matched_fragments": 166, "total_fragments": 616, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 71.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_905479725.1", "gtdb_species": "s__Pararhodobacter sp905479725", "ani": 100.0, "matched_fragments": 609, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pararhodobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_003122215.1", "gtdb_species": "s__Pararhodobacter marinus", "ani": 79.6089, "matched_fragments": 372, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pararhodobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017303295.1", "gtdb_species": "s__Pararhodobacter sp017303295", "ani": 79.371, "matched_fragments": 361, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pararhodobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003075525.1", "gtdb_species": "s__Pararhodobacter aggregans", "ani": 79.3378, "matched_fragments": 380, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pararhodobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_003076755.1", "gtdb_species": "s__Pararhodobacter oceanensis", "ani": 79.007, "matched_fragments": 338, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pararhodobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003990445.1", "gtdb_species": "s__Pararhodobacter zhoushanensis", "ani": 78.9244, "matched_fragments": 370, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pararhodobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_001314715.1", "gtdb_species": "s__Pararhodobacter sp001314715", "ani": 78.6549, "matched_fragments": 270, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pararhodobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017811755.1", "gtdb_species": "s__Pararhodobacter sp017811755", "ani": 77.9572, "matched_fragments": 238, "total_fragments": 616, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Pararhodobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007120685.1", "gtdb_species": 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"f__Rhodobacteraceae", "g__Pararhodobacter", "s__Pararhodobacter sp905479725", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "Rhodobacterales", "Rhodobacteraceae", "Pararhodobacter", "Pararhodobacter", "sp905479725" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }