{ "type": "genome", "identifier": "GCA_905480045.1", "organism": "uncultured Saprospiraceae bacterium", "title": "uncultured Saprospiraceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY", "publication": [ {} ], "properties": { "assembly_accession": "GCA_905480045.1", "bioproject": "PRJEB38290", "biosample": "SAMEA8498648", "wgs_master": "CAJQOZ000000000.1", "refseq_category": "na", "taxid": "261514", "species_taxid": "261514", "organism_name": "uncultured Saprospiraceae bacterium", "infraspecific_name": "", "isolate": "10_20180529_Bin_METABAT_42_1", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/04/15", "asm_name": "10_20180529_Bin_METABAT_42_1", "submitter": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/480/045/GCA_905480045.1_10_20180529_Bin_METABAT_42_1", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-04-15", "dateModified": "2021-04-15", "datePublished": "2021-04-15", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Saprospiraceae bacterium" ], "sample_taxid": [ "261514" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "North Sea" ], "sample_host_location_id": [], "data_size": "2.421 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, 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"matched_fragments": 54, "total_fragments": 2440, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter porphyrae", "strain": "strain=LMG 26671", "accession": "GCA_020532745.1", "taxid": 1137780, "species_taxid": 1137780, "relation_to_type": "type", "validated": true, "ani": 74.7865, "matched_fragments": 55, "total_fragments": 2440, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_017857395.1", "gtdb_species": "s__JAFMDF01 sp017857395", "ani": 98.0989, "matched_fragments": 2021, "total_fragments": 2440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__JAFMDF01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.01", "min_intra_species_ani": "98.09", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": 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"s__JADJVK01 sp016710625", "ani": 74.7407, "matched_fragments": 52, "total_fragments": 2440, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Chitinophagales;f__Saprospiraceae;g__JADJVK01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.125, "cell_length": 0.653, "doubling_h": null, "growth_tmp": 30.0, "optimum_tmp": 29.062, "optimum_ph": 7.0, "genome_size": 4430689.167, "gc_content": 46.251, "coding_genes": 3955.333, "rRNA16S_genes": 3.0, "tRNA_genes": 48.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.5, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.5 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Chitinophagales", "f__Saprospiraceae", "g__JAFMDF01", "s__JAFMDF01 sp017857395" ], "_genome_taxon": [ "uncultured", "Saprospiraceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Chitinophagales", "f__Saprospiraceae", "g__JAFMDF01", "s__JAFMDF01 sp017857395", "Bacteria", "Bacteroidota", "Bacteroidia", "Chitinophagales", "Saprospiraceae", "JAFMDF01", "JAFMDF01", "sp017857395" ], "_meo": [ { "id": "MEO_0000041", "label": "marine water" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }