{
    "type": "genome",
    "identifier": "GCA_905480565.1",
    "organism": "uncultured Halioglobus sp.",
    "title": "uncultured Halioglobus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_905480565.1",
        "bioproject": "PRJEB38290",
        "biosample": "SAMEA8498584",
        "wgs_master": "CAJQQW000000000.1",
        "refseq_category": "na",
        "taxid": "1492713",
        "species_taxid": "1492713",
        "organism_name": "uncultured Halioglobus sp.",
        "infraspecific_name": "",
        "isolate": "3_20180529_Bin_20180529_Bin_221_1",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/15",
        "asm_name": "3_20180529_Bin_20180529_Bin_221_1",
        "submitter": "MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/480/565/GCA_905480565.1_3_20180529_Bin_20180529_Bin_221_1",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-15",
    "dateModified": "2021-04-15",
    "datePublished": "2021-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Halioglobus sp."
        ],
        "sample_taxid": [
            "1492713"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "North Sea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.904 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 89.53,
        "contamination": 2.08,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3115436",
        "Number of Sequences": "465",
        "Longest Sequences (bp)": "26763",
        "N50 (bp)": "7914",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.4",
        "Number of CDSs": "2468",
        "Average Protein Length": "303.9",
        "Coding Ratio (%)": "72.2",
        "Number of rRNAs": "0",
        "Number of tRNAs": "27",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Parahaliea mediterranea",
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                "accession": "GCA_003402235.1",
                "taxid": 651086,
                "species_taxid": 651086,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 68,
                "total_fragments": 804,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Seongchinamella unica",
                "strain": "strain=GH4-78",
                "accession": "GCA_004354085.1",
                "taxid": 2547392,
                "species_taxid": 2547392,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9952,
                "matched_fragments": 52,
                "total_fragments": 804,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Haliea alexandrii",
                "strain": "strain=LZ-16-2",
                "accession": "GCA_003719295.1",
                "taxid": 2448162,
                "species_taxid": 2448162,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8264,
                "matched_fragments": 52,
                "total_fragments": 804,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Parahaliea maris",
                "strain": "strain=HSLHS9",
                "accession": "GCA_008064665.1",
                "taxid": 2716870,
                "species_taxid": 2716870,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.2834,
                "matched_fragments": 56,
                "total_fragments": 804,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 89.53,
            "contamination": 2.08,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_905480565.1",
                "gtdb_species": "s__Halioglobus sp905480565",
                "ani": 100.0,
                "matched_fragments": 789,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002414665.1",
                "gtdb_species": "s__Haliea sp002414665",
                "ani": 78.6637,
                "matched_fragments": 52,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Haliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.89",
                "min_intra_species_ani": "99.89",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_003402235.1",
                "gtdb_species": "s__Parahaliea mediterranea",
                "ani": 78.1609,
                "matched_fragments": 68,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002699145.1",
                "gtdb_species": "s__Halioglobus sp002699145",
                "ani": 78.0091,
                "matched_fragments": 83,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.96",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_009937575.1",
                "gtdb_species": "s__Halioglobus sp009937575",
                "ani": 77.2268,
                "matched_fragments": 70,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003719295.1",
                "gtdb_species": "s__Haliea alexandrii",
                "ani": 76.8264,
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                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Haliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_902705825.1",
                "gtdb_species": "s__Halioglobus japonicus_A",
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                "matched_fragments": 63,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_013214285.1",
                "gtdb_species": "s__Halioglobus sp013214285",
                "ani": 76.3357,
                "matched_fragments": 60,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Halioglobus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_008064665.1",
                "gtdb_species": "s__Parahaliea maris",
                "ani": 76.2834,
                "matched_fragments": 56,
                "total_fragments": 804,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halieaceae;g__Parahaliea",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": -0.398,
        "doubling_h": null,
        "growth_tmp": 25.0,
        "optimum_tmp": 22.5,
        "optimum_ph": 7.5,
        "genome_size": 4559965.5,
        "gc_content": 57.533,
        "coding_genes": 3929.0,
        "rRNA16S_genes": 2.0,
        "tRNA_genes": 42.0,
        "gram_stain": null,
        "sporulation": null,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Halieaceae",
        "g__Halioglobus",
        "s__Halioglobus sp905480565"
    ],
    "_genome_taxon": [
        "uncultured",
        "Halioglobus",
        "sp.",
        "d__Bacteria",
        "p__Pseudomonadota",
        "c__Gammaproteobacteria",
        "o__Pseudomonadales",
        "f__Halieaceae",
        "g__Halioglobus",
        "s__Halioglobus sp905480565",
        "Bacteria",
        "Pseudomonadota",
        "Gammaproteobacteria",
        "Pseudomonadales",
        "Halieaceae",
        "Halioglobus",
        "Halioglobus",
        "sp905480565"
    ],
    "_meo": [
        {
            "id": "MEO_0000041",
            "label": "marine water"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}