{
    "type": "genome",
    "identifier": "GCA_905620515.1",
    "organism": "uncultured Candidatus Nitrosopumilus sp.",
    "title": "uncultured Candidatus Nitrosopumilus sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "UNIVERSITY OF VIENNA",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_905620515.1",
        "bioproject": "PRJEB35712",
        "biosample": "SAMEA8535535",
        "wgs_master": "CAJQTS000000000.1",
        "refseq_category": "na",
        "taxid": "517606",
        "species_taxid": "517606",
        "organism_name": "uncultured Candidatus Nitrosopumilus sp.",
        "infraspecific_name": "",
        "isolate": "RIS_SAG_64",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/04/15",
        "asm_name": "RIS-SAG-64",
        "submitter": "UNIVERSITY OF VIENNA",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/905/620/515/GCA_905620515.1_RIS-SAG-64",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-04-15",
    "dateModified": "2021-04-15",
    "datePublished": "2021-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Candidatus Nitrosopumilus sp."
        ],
        "sample_taxid": [
            "517606"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Antarctica"
        ],
        "sample_host_location_id": [],
        "data_size": "0.202 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 74.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "729226",
        "Number of Sequences": "46",
        "Longest Sequences (bp)": "114047",
        "N50 (bp)": "31576",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "30.9",
        "Number of CDSs": "834",
        "Average Protein Length": "247.5",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "1",
        "Number of tRNAs": "24",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Nitrosopumilus oxyclinae",
                "strain": "strain=HCE1",
                "accession": "GCA_013407165.1",
                "taxid": 1959104,
                "species_taxid": 1959104,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7296,
                "matched_fragments": 175,
                "total_fragments": 221,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus cobalaminigenes",
                "strain": "strain=HCA1",
                "accession": "GCA_013407145.1",
                "taxid": 1470066,
                "species_taxid": 1470066,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.7043,
                "matched_fragments": 175,
                "total_fragments": 221,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus ureiphilus",
                "strain": "strain=PS0",
                "accession": "GCA_013407185.1",
                "taxid": 1470067,
                "species_taxid": 1470067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.9238,
                "matched_fragments": 163,
                "total_fragments": 221,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Nitrosopumilus adriaticus",
                "strain": "strain=NF5",
                "accession": "GCA_000956175.1",
                "taxid": 1580092,
                "species_taxid": 1580092,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7188,
                "matched_fragments": 167,
                "total_fragments": 221,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 74.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_905616385.1",
                "gtdb_species": "s__Nitrosopumilus sp905616385",
                "ani": 97.8944,
                "matched_fragments": 118,
                "total_fragments": 221,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.32",
                "min_intra_species_ani": "96.75",
                "mean_intra_species_af": "0.55",
                "min_intra_species_af": "0.53",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCA_902514095.1",
                "gtdb_species": "s__Nitrosopumilus sp902514095",
                "ani": 94.0555,
                "matched_fragments": 147,
                "total_fragments": 221,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_905612295.1",
                "gtdb_species": "s__Nitrosopumilus sp905612295",
                "ani": 89.2356,
                "matched_fragments": 129,
                "total_fragments": 221,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_001437625.1",
                "gtdb_species": "s__Nitrosopumilus sp001437625",
                "ani": 89.0144,
                "matched_fragments": 166,
                "total_fragments": 221,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.62",
                "min_intra_species_ani": "95.42",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.75",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_018674605.1",
                "gtdb_species": "s__Nitrosopumilus sp018674605",
                "ani": 87.5177,
                "matched_fragments": 97,
                "total_fragments": 221,
                "gtdb_taxonomy": "d__Archaea;p__Thermoproteota;c__Nitrososphaeria;o__Nitrososphaerales;f__Nitrosopumilaceae;g__Nitrosopumilus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.83",
                "min_intra_species_ani": "98.50",
                "mean_intra_species_af": "0.79",
                "min_intra_species_af": "0.69",
                "num_clustered_genomes": 12,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Thermoproteota",
        "c__Nitrososphaeria",
        "o__Nitrososphaerales",
        "f__Nitrosopumilaceae",
        "g__Nitrosopumilus",
        "s__Nitrosopumilus sp905616385"
    ],
    "_genome_taxon": [
        "uncultured",
        "Candidatus",
        "Nitrosopumilus",
        "sp.",
        "d__Archaea",
        "p__Thermoproteota",
        "c__Nitrososphaeria",
        "o__Nitrososphaerales",
        "f__Nitrosopumilaceae",
        "g__Nitrosopumilus",
        "s__Nitrosopumilus sp905616385",
        "Archaea",
        "Thermoproteota",
        "Nitrososphaeria",
        "Nitrososphaerales",
        "Nitrosopumilaceae",
        "Nitrosopumilus",
        "Nitrosopumilus",
        "sp905616385"
    ],
    "_meo": [
        {
            "id": "MEO_0000414",
            "label": "ice"
        },
        {
            "id": "MEO_0000023",
            "label": "sea"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}