{ "type": "genome", "identifier": "GCA_910577285.1", "organism": "uncultured Rikenellaceae bacterium", "title": "uncultured Rikenellaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF CAMBRIDGE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_910577285.1", "bioproject": "PRJEB45234", "biosample": "SAMEA8804968", "wgs_master": "CAJTLO000000000.1", "refseq_category": "na", "taxid": "331634", "species_taxid": "331634", "organism_name": "uncultured Rikenellaceae bacterium", "infraspecific_name": "", "isolate": "MGBC100163", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/07", "asm_name": "MGBC100163", "submitter": "UNIVERSITY OF CAMBRIDGE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/577/285/GCA_910577285.1_MGBC100163", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-07", "dateModified": "2021-07-07", "datePublished": "2021-07-07", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Rikenellaceae bacterium" ], "sample_taxid": [ "331634" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "0.570 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2019456", "Number of Sequences": "15", "Longest Sequences (bp)": "462596", "N50 (bp)": "289438", "Gap Ratio (%)": "0.050013", "GCcontent (%)": "58.8", "Number of CDSs": "1700", "Average Protein Length": "328.8", "Coding Ratio (%)": "83.0", "Number of rRNAs": "0", "Number of tRNAs": "40", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gallalistipes aquisgranensis", "strain": "strain=DSM 108975", "accession": "GCA_014982715.1", "taxid": 2779358, "species_taxid": 2779358, "relation_to_type": "type", "validated": true, "ani": 77.8054, "matched_fragments": 127, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes dispar", "strain": "strain=5CPEGH6", "accession": "GCA_006542685.1", "taxid": 2585119, "species_taxid": 2585119, "relation_to_type": "type", "validated": true, "ani": 77.5389, "matched_fragments": 119, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes shahii", "strain": "strain=WAL 8301", "accession": "GCA_000210575.1", "taxid": 328814, "species_taxid": 328814, "relation_to_type": "suspected-type", "validated": true, "ani": 77.535, "matched_fragments": 121, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes senegalensis", "strain": "strain=FDAARGOS_1578", "accession": "GCA_020735725.1", "taxid": 1288121, "species_taxid": 1288121, "relation_to_type": "type", "validated": true, "ani": 77.4561, "matched_fragments": 141, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes shahii", "strain": "strain=WAL 8301", "accession": "GCA_025145845.1", "taxid": 328814, "species_taxid": 328814, "relation_to_type": "suspected-type", "validated": true, "ani": 77.4498, "matched_fragments": 122, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes senegalensis", "strain": "strain=JC50", "accession": "GCA_025145645.1", "taxid": 1288121, "species_taxid": 1288121, "relation_to_type": "type", "validated": true, "ani": 77.4298, "matched_fragments": 138, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes onderdonkii", "strain": "strain=DSM 19147", "accession": "GCA_025145285.1", "taxid": 328813, "species_taxid": 328813, "relation_to_type": "type", "validated": true, "ani": 77.4, "matched_fragments": 125, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes provencensis", "strain": "strain=Marseille-P2431", "accession": "GCA_900083545.1", "taxid": 1816676, "species_taxid": 1816676, "relation_to_type": "type", "validated": true, "ani": 77.39, "matched_fragments": 135, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes 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"taxid": 2834113, "species_taxid": 2834113, "relation_to_type": "type", "validated": true, "ani": 76.9073, "matched_fragments": 114, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes ihumii", "strain": "strain=AP11", "accession": "GCA_025144665.1", "taxid": 1470347, "species_taxid": 1470347, "relation_to_type": "type", "validated": true, "ani": 76.8716, "matched_fragments": 75, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes megaguti", "strain": "strain=Marseille-P5997", "accession": "GCA_900604385.1", "taxid": 2364787, "species_taxid": 2364787, "relation_to_type": "type", "validated": true, "ani": 76.8498, "matched_fragments": 124, "total_fragments": 667, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alistipes indistinctus", "strain": "strain=YIT 12060", "accession": "GCA_025144995.1", "taxid": 626932, "species_taxid": 626932, "relation_to_type": 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