{ "type": "genome", "identifier": "GCA_910584565.1", "organism": "uncultured Lactobacillaceae bacterium", "title": "uncultured Lactobacillaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "UNIVERSITY OF CAMBRIDGE", "publication": [ {} ], "properties": { "assembly_accession": "GCA_910584565.1", "bioproject": "PRJEB45234", "biosample": "SAMEA8805414", "wgs_master": "CAJUAZ000000000.1", "refseq_category": "na", "taxid": "218288", "species_taxid": "218288", "organism_name": "uncultured Lactobacillaceae bacterium", "infraspecific_name": "", "isolate": "MGBC123951", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/07/07", "asm_name": "MGBC123951", "submitter": "UNIVERSITY OF CAMBRIDGE", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/584/565/GCA_910584565.1_MGBC123951", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-07-07", "dateModified": "2021-07-07", "datePublished": "2021-07-07", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Lactobacillaceae bacterium" ], "sample_taxid": [ "218288" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.517 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.12, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1809361", "Number of Sequences": "75", "Longest Sequences (bp)": "169506", "N50 (bp)": "36711", "Gap Ratio (%)": "0.020891", "GCcontent (%)": "40.1", "Number of CDSs": "1687", "Average Protein Length": "303.8", "Coding Ratio (%)": "85.0", "Number of rRNAs": "0", "Number of tRNAs": "20", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Limosilactobacillus urinaemulieris", "strain": "strain=c9Ua_26_M", "accession": "GCA_014838745.1", "taxid": 2742600, "species_taxid": 2742600, "relation_to_type": "type", "validated": true, "ani": 97.5862, "matched_fragments": 486, "total_fragments": 566, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Limosilactobacillus portuensis", "strain": "strain=c11Ua_112_M", "accession": "GCA_014838735.1", "taxid": 2742601, "species_taxid": 2742601, "relation_to_type": "type", "validated": true, "ani": 92.8401, "matched_fragments": 489, "total_fragments": 566, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus vaginalis", "strain": "strain=DSM 5837", "accession": "GCA_001435915.1", "taxid": 1633, "species_taxid": 1633, "relation_to_type": "type", "validated": true, "ani": 90.8732, "matched_fragments": 428, "total_fragments": 566, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus vaginalis", "strain": "strain=ATCC 49540", "accession": "GCA_000159435.1", "taxid": 1633, "species_taxid": 1633, "relation_to_type": "type", "validated": true, "ani": 90.6358, "matched_fragments": 485, "total_fragments": 566, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Limosilactobacillus avistercoris", "strain": "strain=Sa3CUN2", "accession": "GCA_014836425.1", "taxid": 2762243, "species_taxid": 2762243, "relation_to_type": "type", "validated": true, "ani": 83.4874, "matched_fragments": 361, "total_fragments": 566, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.12, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014838745.1", "gtdb_species": "s__Limosilactobacillus urinaemulieris", "ani": 97.5862, "matched_fragments": 486, "total_fragments": 566, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.61", "min_intra_species_ani": "97.61", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_014838735.1", "gtdb_species": "s__Limosilactobacillus portuensis", "ani": 92.828, "matched_fragments": 490, "total_fragments": 566, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.50", "min_intra_species_ani": "97.46", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_000159435.1", "gtdb_species": "s__Limosilactobacillus vaginalis", "ani": 90.6358, "matched_fragments": 485, "total_fragments": 566, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.80", "min_intra_species_ani": "96.39", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.86", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_014836425.1", "gtdb_species": "s__Limosilactobacillus sp014836425", "ani": 83.5102, "matched_fragments": 360, "total_fragments": 566, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": 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"mean_intra_species_af": "0.81", "min_intra_species_af": "0.81", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009663775.1", "gtdb_species": "s__Limosilactobacillus sp009663775", "ani": 80.3922, "matched_fragments": 165, "total_fragments": 566, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Lactobacillales;f__Lactobacillaceae;g__Limosilactobacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.62", "min_intra_species_ani": "98.62", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.83", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.148, "cell_length": 0.342, "doubling_h": -0.086, "growth_tmp": 32.765, "optimum_tmp": 31.912, "optimum_ph": 6.069, "genome_size": 2286847.221, "gc_content": 40.309, "coding_genes": 2104.389, "rRNA16S_genes": 5.027, "tRNA_genes": 63.201, "gram_stain": 1.0, "sporulation": 0.009, "motility": 0.075, "range_salinity": 0.0, 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"\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }