{ "type": "genome", "identifier": "GCA_913040985.1", "organism": "Aequorivita aquimaris", "title": "Aequorivita aquimaris", "description": "derived from metagenome; incomplete metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_913040985.1", "bioproject": "PRJEB37807", "biosample": "SAMEA9694970", "wgs_master": "CAJWHI000000000.1", "refseq_category": "na", "taxid": "1548749", "species_taxid": "1548749", "organism_name": "Aequorivita aquimaris", "infraspecific_name": "", "isolate": "ERR599136_bin.163_MetaBAT_v2.12.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/22", "asm_name": "ERR599136_bin.163_MetaBAT_v2.12.1_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/913/040/985/GCA_913040985.1_ERR599136_bin.163_MetaBAT_v2.12.1_MAG", "excluded_from_refseq": "derived from metagenome; incomplete metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-22", "dateModified": "2021-09-22", "datePublished": "2021-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Aequorivita aquimaris" ], "sample_taxid": [ "1548749" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.538 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 50.02, "contamination": 0.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1869738", "Number of Sequences": "299", "Longest Sequences (bp)": "24993", "N50 (bp)": "7074", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.8", "Number of CDSs": "1564", "Average Protein Length": "296.3", "Coding Ratio (%)": "74.3", "Number of rRNAs": "0", "Number of tRNAs": "14", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Aequorivita aquimaris", "strain": "strain=D-24", "accession": "GCA_001573155.1", "taxid": 1548749, "species_taxid": 1548749, "relation_to_type": "type", "validated": true, "ani": 97.1984, "matched_fragments": 440, "total_fragments": 468, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Aequorivita vladivostokensis", "strain": "strain=KMM 3516", "accession": "GCA_000952855.1", "taxid": 171194, "species_taxid": 171194, "relation_to_type": "type", "validated": true, "ani": 91.1268, "matched_fragments": 419, "total_fragments": 468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita iocasae", "strain": "strain=KX20305", "accession": "GCA_016757735.1", "taxid": 2803865, "species_taxid": 2803865, "relation_to_type": "type", "validated": true, "ani": 85.3384, "matched_fragments": 396, "total_fragments": 468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita soesokkakensis", "strain": "strain=RSSK-12", "accession": "GCA_001641085.1", "taxid": 1385699, "species_taxid": 1385699, "relation_to_type": "type", "validated": true, "ani": 82.9644, "matched_fragments": 353, "total_fragments": 468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita antarctica", "strain": "strain=SW49", "accession": "GCA_007997155.1", "taxid": 153266, "species_taxid": 153266, "relation_to_type": "type", "validated": true, "ani": 80.3207, "matched_fragments": 334, "total_fragments": 468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita lipolytica", "strain": "strain=Y10-2", "accession": "GCA_007997135.1", "taxid": 153267, "species_taxid": 153267, "relation_to_type": "type", "validated": true, "ani": 80.1719, "matched_fragments": 344, "total_fragments": 468, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aequorivita sublithincola", "strain": "strain=DSM 14238", "accession": "GCA_000265385.1", "taxid": 101385, "species_taxid": 101385, "relation_to_type": "type", "validated": true, "ani": 79.3152, "matched_fragments": 295, "total_fragments": 468, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 50.02, "contamination": 0.38, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001573155.1", "gtdb_species": "s__Aequorivita aquimaris", "ani": 97.1984, "matched_fragments": 440, "total_fragments": 468, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000952855.1", "gtdb_species": "s__Aequorivita vladivostokensis", "ani": 91.1268, "matched_fragments": 419, "total_fragments": 468, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.24", "min_intra_species_ani": "98.00", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCA_002364215.1", "gtdb_species": "s__Aequorivita sp002364215", "ani": 90.0106, "matched_fragments": 426, "total_fragments": 468, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.66", "min_intra_species_ani": "98.55", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.89", "num_clustered_genomes": 12, "status": "-" }, { "accession": "GCA_002715485.1", "gtdb_species": "s__Aequorivita sp002715485", "ani": 86.1141, "matched_fragments": 366, "total_fragments": 468, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.49", "min_intra_species_ani": "99.49", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_016757735.1", "gtdb_species": "s__Aequorivita sp016757735", "ani": 85.3384, "matched_fragments": 396, "total_fragments": 468, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002733915.1", "gtdb_species": "s__Aequorivita sp002733915", "ani": 84.1066, "matched_fragments": 390, "total_fragments": 468, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001641085.1", "gtdb_species": "s__Aequorivita soesokkakensis", "ani": 82.9644, "matched_fragments": 353, "total_fragments": 468, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Aequorivita", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.26", "min_intra_species_ani": "97.26", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.226, "cell_length": 0.601, "doubling_h": null, "growth_tmp": 21.285, "optimum_tmp": 29.166, "optimum_ph": 7.375, "genome_size": 3449435.383, "gc_content": 36.55, "coding_genes": 3133.333, "rRNA16S_genes": 2.0, "tRNA_genes": 36.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Aequorivita", "s__Aequorivita aquimaris" ], "_genome_taxon": [ "Aequorivita", "aquimaris", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Flavobacteriales", "f__Flavobacteriaceae", "g__Aequorivita", "s__Aequorivita aquimaris", "Bacteria", "Bacteroidota", "Bacteroidia", "Flavobacteriales", "Flavobacteriaceae", "Aequorivita", "Aequorivita", "aquimaris" ], "_meo": [ { "id": "MEO_0000023", "label": "sea" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }