{ "type": "genome", "identifier": "GCA_913041985.1", "organism": "uncultured Caulobacterales bacterium", "title": "uncultured Caulobacterales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_913041985.1", "bioproject": "PRJEB37807", "biosample": "SAMEA9694160", "wgs_master": "CAJWKL000000000.1", "refseq_category": "na", "taxid": "395523", "species_taxid": "395523", "organism_name": "uncultured Caulobacterales bacterium", "infraspecific_name": "", "isolate": "ERR599075_bin.36_MetaBAT_v2.12.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/22", "asm_name": "ERR599075_bin.36_MetaBAT_v2.12.1_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/913/041/985/GCA_913041985.1_ERR599075_bin.36_MetaBAT_v2.12.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-22", "dateModified": "2021-09-22", "datePublished": "2021-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Caulobacterales bacterium" ], "sample_taxid": [ "395523" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.564 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 57.64, "contamination": 3.12, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2006839", "Number of Sequences": "502", "Longest Sequences (bp)": "14246", "N50 (bp)": "4140", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "67.2", "Number of CDSs": "1558", "Average Protein Length": "267.4", "Coding Ratio (%)": "62.3", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Brevundimonas aurantiaca", "strain": "strain=DSM 4731", "accession": "GCA_014199955.1", "taxid": 74316, "species_taxid": 74316, "relation_to_type": "type", "validated": true, "ani": 96.7391, "matched_fragments": 389, "total_fragments": 410, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Brevundimonas mediterranea", "strain": "strain=DSM 14878", "accession": "GCA_014196125.1", "taxid": 74329, "species_taxid": 74329, "relation_to_type": "type", "validated": true, "ani": 87.0492, "matched_fragments": 358, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas huaxiensis", "strain": "strain=090558", "accession": "GCA_014218725.1", "taxid": 2725493, "species_taxid": 2725493, "relation_to_type": "type", "validated": true, "ani": 84.8417, "matched_fragments": 332, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas vesicularis", "strain": "strain=NBRC 12165", "accession": "GCA_001592205.1", "taxid": 41276, "species_taxid": 41276, "relation_to_type": "suspected-type", "validated": true, "ani": 84.7196, "matched_fragments": 325, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas albigilva", "strain": "strain=KEME 9005-016", "accession": "GCA_023503965.1", "taxid": 1312364, "species_taxid": 1312364, "relation_to_type": "type", "validated": true, "ani": 84.5138, "matched_fragments": 321, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas nasdae", "strain": "strain=JCM 11415", "accession": "GCA_016654005.1", "taxid": 172043, "species_taxid": 172043, "relation_to_type": "type", "validated": true, "ani": 83.7921, "matched_fragments": 312, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas guildfordensis", "strain": "strain=Sa3CVA3", "accession": "GCA_014836405.1", "taxid": 2762241, "species_taxid": 2762241, "relation_to_type": "type", "validated": true, "ani": 81.5771, "matched_fragments": 247, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Brevundimonas vitisensis", "strain": "strain=GR-TSA-9", "accession": "GCA_016656965.1", "taxid": 2800818, "species_taxid": 2800818, "relation_to_type": "type", "validated": true, "ani": 79.7287, "matched_fragments": 229, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phenylobacterium glaciei", "strain": "strain=20VBR1", "accession": "GCA_016772415.2", "taxid": 2803784, "species_taxid": 2803784, "relation_to_type": "type", "validated": true, "ani": 77.3997, "matched_fragments": 139, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium terricola", "strain": "strain=17Sr1-39", "accession": "GCA_006151805.1", "taxid": 2583531, "species_taxid": 2583531, "relation_to_type": "type", "validated": true, "ani": 75.5485, "matched_fragments": 75, "total_fragments": 410, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 57.64, "contamination": 3.12, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_014199955.1", "gtdb_species": "s__Brevundimonas aurantiaca", "ani": 96.7391, "matched_fragments": 389, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.57", "min_intra_species_ani": "96.95", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.85", "num_clustered_genomes": 12, "status": "conclusive" }, { "accession": "GCA_001796045.1", "gtdb_species": "s__Brevundimonas sp001796045", "ani": 87.9914, "matched_fragments": 317, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_011064825.1", "gtdb_species": "s__Brevundimonas mediterranea_A", "ani": 87.4181, "matched_fragments": 352, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0657, "mean_intra_species_ani": "98.11", "min_intra_species_ani": "97.23", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.83", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCF_014196125.1", "gtdb_species": "s__Brevundimonas mediterranea", "ani": 87.02, "matched_fragments": 359, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0657, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013912065.1", "gtdb_species": "s__Brevundimonas sp013912065", "ani": 86.6681, "matched_fragments": 350, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002434505.1", "gtdb_species": "s__Brevundimonas sp002434505", "ani": 85.2981, "matched_fragments": 346, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.71", "min_intra_species_ani": "99.71", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.98", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002157625.1", "gtdb_species": "s__Brevundimonas sp002157625", "ani": 85.1677, "matched_fragments": 320, "total_fragments": 410, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_003248455.1", "gtdb_species": "s__Brevundimonas sp003248455", "ani": 84.7344, "matched_fragments": 322, "total_fragments": 410, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Caulobacterales;f__Caulobacteraceae;g__Brevundimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.266, "cell_length": 0.126, "doubling_h": 0.513, "growth_tmp": 29.207, "optimum_tmp": 28.864, "optimum_ph": 7.037, "genome_size": 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"Caulobacterales", "Caulobacteraceae", "Brevundimonas", "Brevundimonas", "aurantiaca" ], "_meo": [ { "id": "MEO_0000023", "label": "sea" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }