{ "type": "genome", "identifier": "GCA_913044005.1", "organism": "uncultured Alcanivoracaceae bacterium", "title": "uncultured Alcanivoracaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_913044005.1", "bioproject": "PRJEB37807", "biosample": "SAMEA9694076", "wgs_master": "CAJWOE000000000.1", "refseq_category": "na", "taxid": "498745", "species_taxid": "498745", "organism_name": "uncultured Alcanivoracaceae bacterium", "infraspecific_name": "", "isolate": "ERR599044_bin.36_MetaBAT_v2.12.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/22", "asm_name": "ERR599044_bin.36_MetaBAT_v2.12.1_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/913/044/005/GCA_913044005.1_ERR599044_bin.36_MetaBAT_v2.12.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-22", "dateModified": "2021-09-22", "datePublished": "2021-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Alcanivoracaceae bacterium" ], "sample_taxid": [ "498745" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "1.058 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 73.99, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3685286", "Number of Sequences": "137", "Longest Sequences (bp)": "190629", "N50 (bp)": "43024", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "58.2", "Number of CDSs": "3348", "Average Protein Length": "318.0", "Coding Ratio (%)": "86.7", "Number of rRNAs": "0", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Alcanivorax profundi", "strain": "strain=MTEO17", "accession": "GCA_003597125.1", "taxid": 2338368, "species_taxid": 2338368, "relation_to_type": "type", "validated": true, "ani": 94.5469, "matched_fragments": 977, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax nanhaiticus", "strain": "strain=19-m-6", "accession": "GCA_000756665.1", "taxid": 1177154, "species_taxid": 1177154, "relation_to_type": "type", "validated": true, "ani": 81.8012, "matched_fragments": 689, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax sediminis", "strain": "strain=PA15-N-34", "accession": "GCA_009601165.1", "taxid": 2663008, "species_taxid": 2663008, "relation_to_type": "type", "validated": true, "ani": 81.4787, "matched_fragments": 645, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax jadensis", "strain": "strain=T9", "accession": "GCA_000756655.1", "taxid": 64988, "species_taxid": 64988, "relation_to_type": "type", "validated": true, "ani": 80.6678, "matched_fragments": 642, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax hongdengensis", "strain": "strain=A-11-3", "accession": "GCA_000300995.1", "taxid": 519051, "species_taxid": 519051, "relation_to_type": "type", "validated": true, "ani": 80.4588, "matched_fragments": 574, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax borkumensis", "strain": "strain=SK2", "accession": "GCA_000009365.1", "taxid": 59754, "species_taxid": 59754, "relation_to_type": "type", "validated": true, "ani": 79.3044, "matched_fragments": 420, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax marinus", "strain": "strain=R8-12", "accession": "GCA_025532125.1", "taxid": 1177169, "species_taxid": 1177169, "relation_to_type": "type", "validated": true, "ani": 78.3965, "matched_fragments": 325, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax profundimaris", "strain": "strain=ST75FaO-1", "accession": "GCA_015265435.1", "taxid": 2735259, "species_taxid": 2735259, "relation_to_type": "type", "validated": true, "ani": 78.2664, "matched_fragments": 351, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax gelatiniphagus", "strain": "strain=MEBiC 08158", "accession": "GCA_005938655.1", "taxid": 1194167, "species_taxid": 1194167, "relation_to_type": "type", "validated": true, "ani": 78.2452, "matched_fragments": 360, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax balearicus", "strain": "strain=MACL04", "accession": "GCA_025532145.1", "taxid": 413232, "species_taxid": 413232, "relation_to_type": "type", "validated": true, "ani": 78.161, "matched_fragments": 316, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Alcanivorax limicola", "strain": "strain=JB21", "accession": "GCA_019931215.1", "taxid": 2874102, "species_taxid": 2874102, "relation_to_type": "type", "validated": true, "ani": 77.43, "matched_fragments": 200, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Marinobacterium arenosum", "strain": "strain=CAU 1594", "accession": "GCA_019795155.1", "taxid": 2862496, "species_taxid": 2862496, "relation_to_type": "type", "validated": true, "ani": 76.9581, "matched_fragments": 75, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Serratia bockelmannii", "strain": "strain=S3", "accession": "GCA_008011855.1", "taxid": 2703793, "species_taxid": 2703793, "relation_to_type": "type", "validated": true, "ani": 75.8102, "matched_fragments": 54, "total_fragments": 1165, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 73.99, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002706085.1", "gtdb_species": "s__Alcanivorax sp002706085", "ani": 99.6769, "matched_fragments": 1091, "total_fragments": 1165, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.88", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_003597125.1", "gtdb_species": "s__Alcanivorax profundi", "ani": 94.5469, "matched_fragments": 977, "total_fragments": 1165, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.31", "min_intra_species_ani": "99.31", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_017794965.1", "gtdb_species": "s__Alcanivorax sp017794965", "ani": 82.3707, "matched_fragments": 733, "total_fragments": 1165, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000756665.1", "gtdb_species": "s__Alcanivorax nanhaiticus", "ani": 81.8232, "matched_fragments": 687, "total_fragments": 1165, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009882945.1", "gtdb_species": "s__Alcanivorax sp009882945", "ani": 81.5049, "matched_fragments": 663, "total_fragments": 1165, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009601165.1", "gtdb_species": "s__Alcanivorax sediminis", "ani": 81.485, "matched_fragments": 644, "total_fragments": 1165, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000756655.1", "gtdb_species": "s__Alcanivorax jadensis", "ani": 80.7164, "matched_fragments": 637, "total_fragments": 1165, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Alcanivoracaceae;g__Alcanivorax", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.11", "min_intra_species_ani": "97.73", "mean_intra_species_af": "0.92", 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