{ "type": "genome", "identifier": "GCA_913044175.1", "organism": "uncultured Cellvibrionales bacterium", "title": "uncultured Cellvibrionales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_913044175.1", "bioproject": "PRJEB37807", "biosample": "SAMEA9694893", "wgs_master": "CAJWOH000000000.1", "refseq_category": "na", "taxid": "1983277", "species_taxid": "1983277", "organism_name": "uncultured Cellvibrionales bacterium", "infraspecific_name": "", "isolate": "ERR599044_bin.5_MetaBAT_v2.12.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/22", "asm_name": "ERR599044_bin.5_MetaBAT_v2.12.1_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/913/044/175/GCA_913044175.1_ERR599044_bin.5_MetaBAT_v2.12.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-22", "dateModified": "2021-09-22", "datePublished": "2021-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Cellvibrionales bacterium" ], "sample_taxid": [ "1983277" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "1.361 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4700611", "Number of Sequences": "138", "Longest Sequences (bp)": "289749", "N50 (bp)": "55543", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.0", "Number of CDSs": "4052", "Average Protein Length": "327.7", "Coding Ratio (%)": "84.7", "Number of rRNAs": "0", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomaricurvus alkylphenolicus", "strain": "strain=KCTC 32386", "accession": "GCA_011683955.1", "taxid": 1306991, "species_taxid": 1306991, "relation_to_type": "type", "validated": true, "ani": 77.9698, "matched_fragments": 195, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aestuariicella albida", "strain": "strain=HHU G3-2", "accession": "GCA_018863235.1", "taxid": 2842452, "species_taxid": 2842452, "relation_to_type": "type", "validated": true, "ani": 77.9551, "matched_fragments": 206, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoteredinibacter isoporae", "strain": "strain=DSM 22368", "accession": "GCA_011683895.1", "taxid": 570281, "species_taxid": 570281, "relation_to_type": "type", "validated": true, "ani": 77.1404, "matched_fragments": 93, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoteredinibacter isoporae", "strain": "strain=DSM 22368", "accession": "GCA_014207695.1", "taxid": 570281, "species_taxid": 570281, "relation_to_type": "type", "validated": true, "ani": 77.0788, "matched_fragments": 93, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoteredinibacter isoporae", "strain": "strain=LMG 25246", "accession": "GCA_011602085.1", "taxid": 570281, "species_taxid": 570281, "relation_to_type": "type", "validated": true, "ani": 77.0788, "matched_fragments": 93, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gilvimarinus chinensis", "strain": "strain=DSM 19667", "accession": "GCA_000377745.1", "taxid": 396005, "species_taxid": 396005, "relation_to_type": "type", "validated": true, "ani": 76.2101, "matched_fragments": 71, "total_fragments": 1502, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002707785.1", "gtdb_species": "s__Pseudomaricurvus sp002707785", "ani": 99.8274, "matched_fragments": 1399, "total_fragments": 1502, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Pseudomaricurvus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.83", "min_intra_species_ani": "99.83", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_011683955.1", "gtdb_species": "s__Pseudomaricurvus alkylphenolicus", "ani": 77.9625, "matched_fragments": 196, "total_fragments": 1502, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Pseudomaricurvus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018863235.1", "gtdb_species": "s__Pseudomaricurvus sp018863235", "ani": 77.9551, "matched_fragments": 206, "total_fragments": 1502, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Pseudomaricurvus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": 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