{ "type": "genome", "identifier": "GCA_913044205.1", "organism": "uncultured Salinicola sp.", "title": "uncultured Salinicola sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_913044205.1", "bioproject": "PRJEB37807", "biosample": "SAMEA9695163", "wgs_master": "CAJWNC000000000.1", "refseq_category": "na", "taxid": "1193542", "species_taxid": "1193542", "organism_name": "uncultured Salinicola sp.", "infraspecific_name": "", "isolate": "ERR599112_bin.27_MetaBAT_v2.12.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/22", "asm_name": "ERR599112_bin.27_MetaBAT_v2.12.1_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/913/044/205/GCA_913044205.1_ERR599112_bin.27_MetaBAT_v2.12.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-22", "dateModified": "2021-09-22", "datePublished": "2021-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Salinicola sp." ], "sample_taxid": [ "1193542" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "1.215 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4327264", "Number of Sequences": "199", "Longest Sequences (bp)": "140306", "N50 (bp)": "37127", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.4", "Number of CDSs": "3700", "Average Protein Length": "326.2", "Coding Ratio (%)": "83.7", "Number of rRNAs": "0", "Number of tRNAs": "48", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Salinicola lusitanus", "strain": "strain=CR50", "accession": "GCA_003206045.1", "taxid": 1949085, "species_taxid": 1949085, "relation_to_type": "type", "validated": true, "ani": 90.7156, "matched_fragments": 1148, "total_fragments": 1340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola acroporae", "strain": "strain=LMG 28587", "accession": "GCA_003206615.1", "taxid": 1541440, "species_taxid": 1541440, "relation_to_type": "type", "validated": true, "ani": 90.4441, "matched_fragments": 1147, "total_fragments": 1340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola socius", "strain": "strain=SMB35", "accession": "GCA_001937195.1", "taxid": 404433, "species_taxid": 404433, "relation_to_type": "type", "validated": true, "ani": 85.7212, "matched_fragments": 1022, "total_fragments": 1340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola socius", "strain": "strain=DSM 19940", "accession": "GCA_003206115.1", "taxid": 404433, "species_taxid": 404433, "relation_to_type": "type", "validated": true, "ani": 85.6862, "matched_fragments": 1031, "total_fragments": 1340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola salarius", "strain": "strain=DSM 18044", "accession": "GCA_003206135.1", "taxid": 430457, "species_taxid": 430457, "relation_to_type": "type", "validated": true, "ani": 85.5772, "matched_fragments": 954, "total_fragments": 1340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola halophyticus", "strain": "strain=CR45", "accession": "GCA_003206695.1", "taxid": 1808881, "species_taxid": 1808881, "relation_to_type": "type", "validated": true, "ani": 84.7044, "matched_fragments": 1014, "total_fragments": 1340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola halimionae", "strain": "strain=CPA60", "accession": "GCA_003206065.1", "taxid": 1949081, "species_taxid": 1949081, "relation_to_type": "type", "validated": true, "ani": 83.3125, "matched_fragments": 978, "total_fragments": 1340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola tamaricis", "strain": "strain=F01", "accession": "GCA_003006155.1", "taxid": 1771309, "species_taxid": 1771309, "relation_to_type": "type", "validated": true, "ani": 82.7675, "matched_fragments": 882, "total_fragments": 1340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinicola peritrichatus", "strain": "strain=JCM 18795", "accession": "GCA_003206715.1", "taxid": 1267424, "species_taxid": 1267424, "relation_to_type": "type", "validated": true, "ani": 82.5694, "matched_fragments": 866, "total_fragments": 1340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas sulfidoxydans", "strain": "strain=MCCC 1A11059", "accession": "GCA_017868775.1", "taxid": 2733484, "species_taxid": 2733484, "relation_to_type": "type", "validated": true, "ani": 79.2855, "matched_fragments": 432, "total_fragments": 1340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas aerodenitrificans", "strain": "strain=MCCC 1A11058", "accession": "GCA_021404405.1", "taxid": 2733483, "species_taxid": 2733483, "relation_to_type": "type", "validated": true, "ani": 79.207, "matched_fragments": 409, "total_fragments": 1340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas ethanolica", "strain": "strain=MCCC 1A11081", "accession": "GCA_021404305.1", "taxid": 2733486, "species_taxid": 2733486, "relation_to_type": "type", "validated": true, "ani": 79.0658, "matched_fragments": 407, "total_fragments": 1340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 78.957, "matched_fragments": 404, "total_fragments": 1340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas zhangzhouensis", "strain": "strain=MCCC 1A11036", "accession": "GCA_021404465.1", "taxid": 2733481, "species_taxid": 2733481, "relation_to_type": "type", "validated": true, "ani": 78.8635, "matched_fragments": 378, "total_fragments": 1340, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 83.33, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { 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