{ "type": "genome", "identifier": "GCA_913045225.1", "organism": "uncultured Rhodobiaceae bacterium", "title": "uncultured Rhodobiaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_913045225.1", "bioproject": "PRJEB37807", "biosample": "SAMEA9694754", "wgs_master": "CAJWPC000000000.1", "refseq_category": "na", "taxid": "293299", "species_taxid": "293299", "organism_name": "uncultured Rhodobiaceae bacterium", "infraspecific_name": "", "isolate": "ERR599138_bin.56_MetaBAT_v2.12.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/22", "asm_name": "ERR599138_bin.56_MetaBAT_v2.12.1_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/913/045/225/GCA_913045225.1_ERR599138_bin.56_MetaBAT_v2.12.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-22", "dateModified": "2021-09-22", "datePublished": "2021-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Rhodobiaceae bacterium" ], "sample_taxid": [ "293299" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.383 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1343841", "Number of Sequences": "13", "Longest Sequences (bp)": "287593", "N50 (bp)": "229808", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.9", "Number of CDSs": "1347", "Average Protein Length": "307.7", "Coding Ratio (%)": "92.5", "Number of rRNAs": "1", "Number of tRNAs": "33", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002694595.1", "gtdb_species": "s__TMED25 sp002694595", "ani": 99.2203, "matched_fragments": 148, "total_fragments": 441, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_B;f__TMED25;g__TMED25", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "98.18", "mean_intra_species_af": "0.76", "min_intra_species_af": "0.67", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCA_902633855.1", "gtdb_species": "s__TMED25 sp902633855", "ani": 94.9911, "matched_fragments": 348, "total_fragments": 441, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_B;f__TMED25;g__TMED25", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.57", "min_intra_species_ani": "99.57", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902613795.1", "gtdb_species": "s__TMED25 sp902613795", "ani": 94.7766, "matched_fragments": 403, "total_fragments": 441, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_B;f__TMED25;g__TMED25", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "99.34", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_902538185.1", "gtdb_species": "s__TMED25 sp902538185", "ani": 93.9117, "matched_fragments": 253, "total_fragments": 441, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_B;f__TMED25;g__TMED25", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902632055.1", "gtdb_species": "s__TMED25 sp902632055", "ani": 83.6307, "matched_fragments": 275, "total_fragments": 441, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_B;f__TMED25;g__TMED25", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002699615.1", "gtdb_species": "s__TMED25 sp002699615", "ani": 83.6079, "matched_fragments": 314, "total_fragments": 441, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_B;f__TMED25;g__TMED25", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.16", "min_intra_species_ani": "95.98", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.81", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.218, "cell_length": 0.109, "doubling_h": null, "growth_tmp": 29.833, "optimum_tmp": 31.0, "optimum_ph": 7.356, "genome_size": 3862260.0, "gc_content": 55.1, "coding_genes": 3703.0, "rRNA16S_genes": 1.0, "tRNA_genes": 44.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.5, "range_salinity": 1.0, "facultative_respiration": 0.25, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.75, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 0.833, "coccus_cell_shape": 0.083, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.083, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__TMED25", "f__TMED25", "g__TMED25", "s__TMED25 sp002694595" ], "_genome_taxon": [ "uncultured", "Rhodobiaceae", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Alphaproteobacteria", "o__TMED25", "f__TMED25", "g__TMED25", "s__TMED25 sp002694595", "Bacteria", "Pseudomonadota", "Alphaproteobacteria", "TMED25", "TMED25", "TMED25", "TMED25", "sp002694595" ], "_meo": [ { "id": "MEO_0000023", "label": "sea" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }