{ "type": "genome", "identifier": "GCA_913049545.1", "organism": "uncultured Gammaproteobacteria bacterium", "title": "uncultured Gammaproteobacteria bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_913049545.1", "bioproject": "PRJEB37807", "biosample": "SAMEA9694409", "wgs_master": "CAJWYV000000000.1", "refseq_category": "na", "taxid": "86473", "species_taxid": "86473", "organism_name": "uncultured Gammaproteobacteria bacterium", "infraspecific_name": "", "isolate": "ERR598950_bin.16_MetaBAT_v2.12.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/23", "asm_name": "ERR598950_bin.16_MetaBAT_v2.12.1_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/913/049/545/GCA_913049545.1_ERR598950_bin.16_MetaBAT_v2.12.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-23", "dateModified": "2021-09-23", "datePublished": "2021-09-23", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Gammaproteobacteria bacterium" ], "sample_taxid": [ "86473" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.366 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 58.33, "contamination": 2.08, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1273879", "Number of Sequences": "98", "Longest Sequences (bp)": "61232", "N50 (bp)": "19423", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.4", "Number of CDSs": "1141", "Average Protein Length": "319.9", "Coding Ratio (%)": "86.0", "Number of rRNAs": "1", "Number of tRNAs": "25", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Candidatus Pseudothioglobus singularis", "strain": "strain=PS1", "accession": "GCA_001281385.1", "taxid": 1427364, "species_taxid": 1427364, "relation_to_type": "type", "validated": true, "ani": 79.8036, "matched_fragments": 236, "total_fragments": 378, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 58.33, "contamination": 2.08, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCA_902556205.1", "gtdb_species": "s__Pseudothioglobus sp002169705", "ani": 97.9855, "matched_fragments": 316, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Pseudothioglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.58", "min_intra_species_ani": "95.16", "mean_intra_species_af": "0.83", "min_intra_species_af": "0.80", "num_clustered_genomes": 5, "status": "conclusive" }, { "accession": "GCA_902511025.1", "gtdb_species": "s__Pseudothioglobus sp902511025", "ani": 94.8214, "matched_fragments": 176, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Pseudothioglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902509905.1", "gtdb_species": "s__Pseudothioglobus sp902509905", "ani": 86.9097, "matched_fragments": 289, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Pseudothioglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.83", "min_intra_species_ani": "95.81", "mean_intra_species_af": "0.73", "min_intra_species_af": "0.73", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_001628405.1", "gtdb_species": "s__Pseudothioglobus sp001628405", "ani": 81.9587, "matched_fragments": 297, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Pseudothioglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.86", "min_intra_species_ani": "96.69", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_902512305.1", "gtdb_species": "s__Pseudothioglobus sp902512305", "ani": 80.7353, "matched_fragments": 226, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Pseudothioglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.03", "min_intra_species_ani": "95.27", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.74", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_902513495.1", "gtdb_species": "s__Pseudothioglobus sp902513495", "ani": 79.897, "matched_fragments": 145, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Pseudothioglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.65", "min_intra_species_ani": "97.05", "mean_intra_species_af": "0.53", "min_intra_species_af": "0.51", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001281385.1", "gtdb_species": "s__Pseudothioglobus singularis", "ani": 79.8036, "matched_fragments": 236, "total_fragments": 378, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__PS1;f__Thioglobaceae;g__Pseudothioglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.68", "min_intra_species_ani": "95.87", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.66", "num_clustered_genomes": 7, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__PS1", "f__Thioglobaceae", "g__Pseudothioglobus", "s__Pseudothioglobus sp002169705" ], "_genome_taxon": [ "uncultured", "Gammaproteobacteria", "bacterium", "d__Bacteria", "p__Pseudomonadota", "c__Gammaproteobacteria", "o__PS1", "f__Thioglobaceae", "g__Pseudothioglobus", "s__Pseudothioglobus sp002169705", "Bacteria", "Pseudomonadota", "Gammaproteobacteria", "PS1", "Thioglobaceae", "Pseudothioglobus", "Pseudothioglobus", "sp002169705" ], "_meo": [ { "id": "MEO_0000023", "label": "sea" } ], "quality": 2, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f" }