{ "tc_result": [ { "organism_name": "Pseudomonas marincola", "strain": "strain=JCM 14761", "accession": "GCA_900116605.1", "taxid": 437900, "species_taxid": 437900, "relation_to_type": "type", "validated": true, "ani": 97.4812, "matched_fragments": 1042, "total_fragments": 1090, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pseudomonas segetis", "strain": "strain=CIP 108523", "accession": "GCA_900188155.1", "taxid": 298908, "species_taxid": 298908, "relation_to_type": "type", "validated": true, "ani": 79.3828, "matched_fragments": 526, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas tumuqii", "strain": "strain=LAMW06", "accession": "GCA_013184545.1", "taxid": 2715755, "species_taxid": 2715755, "relation_to_type": "type", "validated": true, "ani": 79.2048, "matched_fragments": 516, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas borbori", "strain": "strain=DSM 17834", "accession": "GCA_900115555.1", "taxid": 289003, "species_taxid": 289003, "relation_to_type": "type", "validated": true, "ani": 79.0414, "matched_fragments": 482, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 78.9791, "matched_fragments": 441, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas granadensis", "strain": "strain=LMG 27940", "accession": "GCA_900105485.1", "taxid": 1421430, "species_taxid": 1421430, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5404, "matched_fragments": 372, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 78.4345, "matched_fragments": 404, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lurida", "strain": "strain=LMG 21995", "accession": "GCA_002563895.1", "taxid": 244566, "species_taxid": 244566, "relation_to_type": "type", "validated": true, "ani": 78.3161, "matched_fragments": 330, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas vancouverensis", "strain": "strain=CCUG 49675", "accession": "GCA_008801375.1", "taxid": 95300, "species_taxid": 95300, "relation_to_type": "type", "validated": true, "ani": 78.2441, "matched_fragments": 380, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas vancouverensis", "strain": "strain=Dha-51", "accession": "GCA_004348895.1", "taxid": 95300, "species_taxid": 95300, "relation_to_type": "type", "validated": true, "ani": 78.2225, "matched_fragments": 380, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Pseudomonas] nosocomialis", "strain": "strain=A31/70", "accession": "GCA_005876855.1", "taxid": 1056496, "species_taxid": 1056496, "relation_to_type": "type", "validated": true, "ani": 77.8333, "matched_fragments": 327, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas nitrititolerans", "strain": "strain=GL14", "accession": "GCA_003696285.1", "taxid": 2482751, "species_taxid": 2482751, "relation_to_type": "type", "validated": true, "ani": 77.8075, "matched_fragments": 295, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=DNSP21", "accession": "GCA_002890935.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 77.7878, "matched_fragments": 299, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas frequens", "strain": "strain=FDAARGOS_877", "accession": "GCA_016028515.1", "taxid": 2968969, "species_taxid": 2968969, "relation_to_type": "type", "validated": true, "ani": 77.7751, "matched_fragments": 304, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas xanthomarina", "strain": "strain=DSM 18231", "accession": "GCA_024328335.1", "taxid": 271420, "species_taxid": 271420, "relation_to_type": "suspected-type", "validated": true, "ani": 77.6691, "matched_fragments": 256, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas xanthomarina", "strain": "strain=DSM 18231", "accession": "GCA_900129835.1", "taxid": 271420, "species_taxid": 271420, "relation_to_type": "suspected-type", "validated": true, "ani": 77.62, "matched_fragments": 266, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas balearica", "strain": "strain=DSM6083 (=SP1402)", "accession": "GCA_000818015.1", "taxid": 74829, "species_taxid": 74829, "relation_to_type": "type", "validated": true, "ani": 77.5804, "matched_fragments": 293, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 44.79, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900116605.1", "gtdb_species": "s__Pseudomonas_E marincola", "ani": 97.4812, "matched_fragments": 1042, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.48", "min_intra_species_ani": "97.31", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 9, "status": "conclusive" }, { "accession": "GCA_002840155.1", "gtdb_species": "s__Pseudomonas_E sp002840155", "ani": 79.4156, "matched_fragments": 504, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013184545.1", "gtdb_species": "s__Pseudomonas_E sp013184545", "ani": 79.2138, "matched_fragments": 515, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900099645.1", "gtdb_species": "s__Pseudomonas_E peli", "ani": 79.0724, "matched_fragments": 482, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.85", "min_intra_species_ani": "96.04", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.85", "num_clustered_genomes": 7, "status": "-" }, { "accession": "GCF_900115555.1", "gtdb_species": "s__Pseudomonas_E borbori", "ani": 79.0322, "matched_fragments": 483, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_018398425.1", "gtdb_species": "s__Pseudomonas_E lalucatii", "ani": 78.9791, "matched_fragments": 441, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.68", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.92", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_003060885.1", "gtdb_species": "s__Pseudomonas_E sp003060885", "ani": 78.9292, "matched_fragments": 442, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001567565.1", "gtdb_species": "s__Pseudomonas_E composti_A", "ani": 78.7386, "matched_fragments": 457, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004327355.1", "gtdb_species": "s__Pseudomonas_E dryadis", "ani": 78.6402, "matched_fragments": 441, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.58", "min_intra_species_ani": "99.16", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_900105485.1", "gtdb_species": "s__Pseudomonas_E granadensis", "ani": 78.5397, "matched_fragments": 372, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.04", "min_intra_species_ani": "95.81", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.92", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_016901015.1", "gtdb_species": "s__Pseudomonas_E sp016901015", "ani": 78.4345, "matched_fragments": 404, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_902825215.1", "gtdb_species": "s__Pseudomonas_E fluorescens_G", "ani": 78.3995, "matched_fragments": 394, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.46", "min_intra_species_ani": "97.46", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.85", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002890895.1", "gtdb_species": "s__Pseudomonas_A stutzeri_AB", "ani": 77.7101, "matched_fragments": 257, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.17", "min_intra_species_ani": "97.01", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCA_004010935.1", "gtdb_species": "s__Pseudomonas_A sp004010935", "ani": 77.6217, "matched_fragments": 255, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.94", "min_intra_species_ani": "95.82", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_900129835.1", "gtdb_species": "s__Pseudomonas_A xanthomarina", "ani": 77.62, "matched_fragments": 266, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002452485.1", "gtdb_species": "s__Pseudomonas_A stutzeri_P", "ani": 77.5745, "matched_fragments": 248, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000235745.1", "gtdb_species": "s__Pseudomonas_A stutzeri_H", "ani": 77.3794, "matched_fragments": 255, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }