{ "type": "genome", "identifier": "GCA_913050225.1", "organism": "uncultured Idiomarinaceae bacterium", "title": "uncultured Idiomarinaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_913050225.1", "bioproject": "PRJEB37807", "biosample": "SAMEA9694925", "wgs_master": "CAJXAB000000000.1", "refseq_category": "na", "taxid": "395357", "species_taxid": "395357", "organism_name": "uncultured Idiomarinaceae bacterium", "infraspecific_name": "", "isolate": "ERR598965_bin.61_MetaBAT_v2.12.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/23", "asm_name": "ERR598965_bin.61_MetaBAT_v2.12.1_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/913/050/225/GCA_913050225.1_ERR598965_bin.61_MetaBAT_v2.12.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-23", "dateModified": "2021-09-23", "datePublished": "2021-09-23", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Idiomarinaceae bacterium" ], "sample_taxid": [ "395357" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.726 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2517759", "Number of Sequences": "26", "Longest Sequences (bp)": "290706", "N50 (bp)": "168558", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.6", "Number of CDSs": "2308", "Average Protein Length": "340.3", "Coding Ratio (%)": "93.6", "Number of rRNAs": "0", "Number of tRNAs": "22", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Idiomarina baltica", "strain": "strain=OS145", "accession": "GCA_000152885.1", "taxid": 190892, "species_taxid": 190892, "relation_to_type": "type", "validated": true, "ani": 89.3735, "matched_fragments": 648, "total_fragments": 826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina fontislapidosi", "strain": "strain=F23", "accession": "GCA_003987025.1", "taxid": 263723, "species_taxid": 263723, "relation_to_type": "type", "validated": true, "ani": 84.521, "matched_fragments": 646, "total_fragments": 826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina fontislapidosi", "strain": "strain=CECT 5859", "accession": "GCA_003226255.1", "taxid": 263723, "species_taxid": 263723, "relation_to_type": "type", "validated": true, "ani": 84.3709, "matched_fragments": 660, "total_fragments": 826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina zobellii", "strain": "strain=KMM 231", "accession": "GCA_001294745.1", "taxid": 86103, "species_taxid": 86103, "relation_to_type": "type", "validated": true, "ani": 77.9208, "matched_fragments": 109, "total_fragments": 826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina zobellii", "strain": "strain=KMM 231", "accession": "GCA_900100855.1", "taxid": 86103, "species_taxid": 86103, "relation_to_type": "type", "validated": true, "ani": 77.911, "matched_fragments": 112, "total_fragments": 826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina seosinensis", "strain": "strain=CL-SP19", "accession": "GCA_003987275.1", "taxid": 281739, "species_taxid": 281739, "relation_to_type": "type", "validated": true, "ani": 77.9034, "matched_fragments": 123, "total_fragments": 826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina piscisalsi", "strain": "strain=TPS4-2", "accession": "GCA_003987095.1", "taxid": 1096243, "species_taxid": 1096243, "relation_to_type": "type", "validated": true, "ani": 77.873, "matched_fragments": 114, "total_fragments": 826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina aquatica", "strain": "strain=SN-14", "accession": "GCA_003987185.1", "taxid": 1327752, "species_taxid": 1327752, "relation_to_type": "type", "validated": true, "ani": 77.8207, "matched_fragments": 145, "total_fragments": 826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina loihiensis", "strain": "strain=L2TR", "accession": "GCA_000008465.1", "taxid": 135577, "species_taxid": 135577, "relation_to_type": "type", "validated": true, "ani": 77.6989, "matched_fragments": 124, "total_fragments": 826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina atlantica", "strain": "strain=MCCC 1A10513", "accession": "GCA_000753735.1", "taxid": 1517416, "species_taxid": 1517416, "relation_to_type": "type", "validated": true, "ani": 77.5031, "matched_fragments": 66, "total_fragments": 826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Idiomarina tyrosinivorans", "strain": "strain=CC-PW-9", "accession": "GCA_003987475.1", "taxid": 1445662, "species_taxid": 1445662, "relation_to_type": "type", "validated": true, "ani": 77.4365, "matched_fragments": 79, "total_fragments": 826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina tainanensis", "strain": "strain=PIN1", "accession": "GCA_004214835.1", "taxid": 502365, "species_taxid": 502365, "relation_to_type": "type", "validated": true, "ani": 77.1827, "matched_fragments": 59, "total_fragments": 826, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudidiomarina maritima", "strain": "strain=CGMCC 1.7285", "accession": "GCA_900115255.1", "taxid": 519453, "species_taxid": 519453, "relation_to_type": "type", "validated": true, "ani": 77.1455, "matched_fragments": 61, "total_fragments": 826, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 75.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002685255.1", "gtdb_species": "s__Idiomarina sp002685255", "ani": 99.9652, "matched_fragments": 808, "total_fragments": 826, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Idiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.23", "min_intra_species_ani": "98.54", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.91", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_001870515.1", "gtdb_species": "s__Idiomarina sp001870515", "ani": 93.6152, "matched_fragments": 777, "total_fragments": 826, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Idiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000152885.1", "gtdb_species": "s__Idiomarina baltica", "ani": 89.3636, "matched_fragments": 649, "total_fragments": 826, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Idiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.48", "min_intra_species_ani": "98.19", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.79", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_003226255.1", "gtdb_species": "s__Idiomarina fontislapidosi", "ani": 84.3709, "matched_fragments": 660, "total_fragments": 826, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Idiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004362895.1", "gtdb_species": "s__Idiomarina sp002729675", "ani": 78.0508, "matched_fragments": 135, "total_fragments": 826, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Idiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.61", "min_intra_species_ani": "97.37", 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"0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000008465.1", "gtdb_species": "s__Idiomarina loihiensis", "ani": 77.6989, "matched_fragments": 124, "total_fragments": 826, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Idiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.95", "min_intra_species_ani": "95.80", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.86", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCF_000753735.1", "gtdb_species": "s__Pseudidiomarina atlantica", "ani": 77.5495, "matched_fragments": 65, "total_fragments": 826, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Pseudidiomarina", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", 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