{ "type": "genome", "identifier": "GCA_913052485.1", "organism": "uncultured Flammeovirgaceae bacterium", "title": "uncultured Flammeovirgaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_913052485.1", "bioproject": "PRJEB37807", "biosample": "SAMEA9695335", "wgs_master": "CAJXDN000000000.1", "refseq_category": "na", "taxid": "585402", "species_taxid": "585402", "organism_name": "uncultured Flammeovirgaceae bacterium", "infraspecific_name": "", "isolate": "ERR599050_bin.113_MetaBAT_v2.12.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/23", "asm_name": "ERR599050_bin.113_MetaBAT_v2.12.1_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/913/052/485/GCA_913052485.1_ERR599050_bin.113_MetaBAT_v2.12.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-23", "dateModified": "2021-09-23", "datePublished": "2021-09-23", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Flammeovirgaceae bacterium" ], "sample_taxid": [ "585402" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.335 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.5, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1193152", "Number of Sequences": "29", "Longest Sequences (bp)": "205736", "N50 (bp)": "66015", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.0", "Number of CDSs": "1093", "Average Protein Length": "336.2", "Coding Ratio (%)": "92.4", "Number of rRNAs": "1", "Number of tRNAs": "18", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 62.5, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_902626505.1", "gtdb_species": "s__MED-G16 sp902626505", "ani": 80.1958, "matched_fragments": 214, "total_fragments": 386, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__MED-G16;g__MED-G16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002701745.1", "gtdb_species": "s__MED-G16 sp002701745", "ani": 79.9583, "matched_fragments": 133, "total_fragments": 386, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__MED-G16;g__MED-G16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.78", "min_intra_species_ani": "96.78", "mean_intra_species_af": "0.79", "min_intra_species_af": "0.79", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902634135.1", "gtdb_species": "s__MED-G16 sp902634135", "ani": 79.3766, "matched_fragments": 138, "total_fragments": 386, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__MED-G16;g__MED-G16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002697405.1", "gtdb_species": "s__MED-G16 sp002697405", "ani": 78.1152, "matched_fragments": 143, "total_fragments": 386, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__MED-G16;g__MED-G16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.03", "min_intra_species_ani": "98.03", "mean_intra_species_af": "0.62", "min_intra_species_af": "0.62", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_002696995.1", "gtdb_species": "s__MED-G16 sp002696995", "ani": 77.9642, "matched_fragments": 108, "total_fragments": 386, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__MED-G16;g__MED-G16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.99", "min_intra_species_ani": "95.99", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.74", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_902523065.1", "gtdb_species": "s__MED-G16 sp902523065", "ani": 77.8602, "matched_fragments": 95, "total_fragments": 386, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__MED-G16;g__MED-G16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.84", "min_intra_species_ani": "95.61", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 9, "status": "-" }, { "accession": "GCA_902633975.1", "gtdb_species": "s__MED-G16 sp902633975", "ani": 77.8109, "matched_fragments": 74, "total_fragments": 386, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__MED-G16;g__MED-G16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002692105.1", "gtdb_species": "s__MED-G16 sp002692105", "ani": 77.5993, "matched_fragments": 94, "total_fragments": 386, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__MED-G16;g__MED-G16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.44", "min_intra_species_ani": "97.02", "mean_intra_species_af": "0.77", "min_intra_species_af": "0.72", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002457315.1", "gtdb_species": "s__MED-G16 sp002457315", "ani": 77.359, "matched_fragments": 145, "total_fragments": 386, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Cytophagales;f__MED-G16;g__MED-G16", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.335, "cell_length": 0.627, "doubling_h": null, "growth_tmp": 27.625, "optimum_tmp": 30.546, "optimum_ph": 7.285, "genome_size": 5427843.384, "gc_content": 43.572, "coding_genes": 4551.0, "rRNA16S_genes": 3.5, "tRNA_genes": 43.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.785, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.666, "thermophilic_range_tmp": 0.333, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Cytophagales_B", "f__MED-G16", "g__MED-G16", "s__MED-G16 sp913052485" ], "_genome_taxon": [ "uncultured", "Flammeovirgaceae", "bacterium", "d__Bacteria", "p__Bacteroidota", "c__Bacteroidia", "o__Cytophagales_B", "f__MED-G16", "g__MED-G16", "s__MED-G16 sp913052485", "Bacteria", "Bacteroidota", "Bacteroidia", "Cytophagales", "B", "MED-G16", "MED-G16", "MED-G16", "sp913052485" ], "_meo": [ { "id": "MEO_0000023", "label": "sea" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }