{ "type": "genome", "identifier": "GCA_913055885.1", "organism": "uncultured Rhodospirillales bacterium", "title": "uncultured Rhodospirillales bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_913055885.1", "bioproject": "PRJEB37807", "biosample": "SAMEA9694522", "wgs_master": "CAJXLG000000000.1", "refseq_category": "na", "taxid": "296830", "species_taxid": "296830", "organism_name": "uncultured Rhodospirillales bacterium", "infraspecific_name": "", "isolate": "SRR6193124_bin.73_MetaBAT_v2.12.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/22", "asm_name": "SRR6193124_bin.73_MetaBAT_v2.12.1_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/913/055/885/GCA_913055885.1_SRR6193124_bin.73_MetaBAT_v2.12.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-22", "dateModified": "2021-09-22", "datePublished": "2021-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Rhodospirillales bacterium" ], "sample_taxid": [ "296830" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.812 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 79.51, "contamination": 4.69, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2958676", "Number of Sequences": "393", "Longest Sequences (bp)": "62465", "N50 (bp)": "10689", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "70.6", "Number of CDSs": "2446", "Average Protein Length": "306.9", "Coding Ratio (%)": "76.1", "Number of rRNAs": "1", "Number of tRNAs": "40", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Roseospirillum parvum", "strain": "strain=930I", "accession": "GCA_900100455.1", "taxid": 83401, "species_taxid": 83401, "relation_to_type": "type", "validated": true, "ani": 77.1543, "matched_fragments": 219, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caenispirillum salinarum", "strain": "strain=AK4", "accession": "GCA_000315795.1", "taxid": 859058, "species_taxid": 859058, "relation_to_type": "type", "validated": true, "ani": 77.1342, "matched_fragments": 243, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospira navarrensis", "strain": "strain=DSM 15114", "accession": "GCA_009601025.1", "taxid": 140058, "species_taxid": 140058, "relation_to_type": "type", "validated": true, "ani": 76.9317, "matched_fragments": 204, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum caucaseum", "strain": "strain=SO-1", "accession": "GCA_000342045.1", "taxid": 1244869, "species_taxid": 1244869, "relation_to_type": "type", "validated": true, "ani": 76.8755, "matched_fragments": 213, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelagibius marinus", "strain": "strain=NBU2595", "accession": "GCA_014925385.1", "taxid": 2762760, "species_taxid": 2762760, "relation_to_type": "type", "validated": true, "ani": 76.7258, "matched_fragments": 210, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum marisnigri", "strain": "strain=SP-1", "accession": "GCA_001650715.1", "taxid": 1285242, "species_taxid": 1285242, "relation_to_type": "type", "validated": true, "ani": 76.6402, "matched_fragments": 174, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospira goensis", "strain": "strain=JA135", "accession": "GCA_014197795.1", "taxid": 391922, "species_taxid": 391922, "relation_to_type": "type", "validated": true, "ani": 76.622, "matched_fragments": 235, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum halopraeferens", "strain": "strain=DSM 3675", "accession": "GCA_000429625.1", "taxid": 34010, "species_taxid": 34010, "relation_to_type": "type", "validated": true, "ani": 76.4346, "matched_fragments": 273, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum tabaci", "strain": "strain=W712", "accession": "GCA_014596085.1", "taxid": 2752310, "species_taxid": 2752310, "relation_to_type": "type", "validated": true, "ani": 76.3652, "matched_fragments": 201, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum argentinense", "strain": "strain=Az39", "accession": "GCA_000632475.2", "taxid": 2970906, "species_taxid": 2970906, "relation_to_type": "type", "validated": true, "ani": 76.3317, "matched_fragments": 191, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum rugosum", "strain": "strain=IMMIB AFH-6", "accession": "GCA_017876155.1", "taxid": 416170, "species_taxid": 416170, "relation_to_type": "type", "validated": true, "ani": 76.3304, "matched_fragments": 214, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum brasilense", "strain": "strain=Sp 7", "accession": "GCA_002027385.1", "taxid": 192, "species_taxid": 192, "relation_to_type": "type", "validated": true, "ani": 76.3104, "matched_fragments": 204, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum formosense", "strain": "strain=CC-NFb-7", "accession": "GCA_013340925.1", "taxid": 861533, "species_taxid": 861533, "relation_to_type": "type", "validated": true, "ani": 76.2797, "matched_fragments": 203, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=DSM 21585", "accession": "GCA_900188055.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.2628, "matched_fragments": 220, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tistlia consotensis", "strain": "strain=USBA 355", "accession": "GCA_900177295.1", "taxid": 1321365, "species_taxid": 1321365, "relation_to_type": "type", "validated": true, "ani": 76.253, "matched_fragments": 225, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Skermanella mucosa", "strain": "strain=KEMB 2255-438", "accession": "GCA_016765655.2", "taxid": 1789672, "species_taxid": 1789672, "relation_to_type": "type", "validated": true, "ani": 76.2352, "matched_fragments": 180, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum soli", "strain": "strain=CC-LY788", "accession": "GCA_017876165.1", "taxid": 1304799, "species_taxid": 1304799, "relation_to_type": "type", "validated": true, "ani": 76.2009, "matched_fragments": 199, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospira marina", "strain": "strain=DSM 15113", "accession": "GCA_014203135.1", "taxid": 140057, "species_taxid": 140057, "relation_to_type": "type", "validated": true, "ani": 76.1732, "matched_fragments": 158, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseospira marina", "strain": "strain=DSM 15113", "accession": "GCA_014197855.1", "taxid": 140057, "species_taxid": 140057, "relation_to_type": "type", "validated": true, "ani": 76.1626, "matched_fragments": 156, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum doebereinerae", "strain": "strain=GSF71", "accession": "GCA_003989665.1", "taxid": 92933, "species_taxid": 92933, "relation_to_type": "type", "validated": true, "ani": 76.1484, "matched_fragments": 211, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenibaculum pallidiluteum", "strain": "strain=SYSU D00532", "accession": "GCA_017355985.1", "taxid": 2812559, "species_taxid": 2812559, "relation_to_type": "type", "validated": true, "ani": 76.0993, "matched_fragments": 162, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseomonas rhizosphaerae", "strain": "strain=YW11", "accession": "GCA_002631185.1", "taxid": 1335062, "species_taxid": 1335062, "relation_to_type": "type", "validated": true, "ani": 75.9888, "matched_fragments": 190, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Elioraea thermophila", "strain": "strain=YIM 72297", "accession": "GCA_003336755.1", "taxid": 2185104, "species_taxid": 2185104, "relation_to_type": "type", "validated": true, "ani": 75.9768, "matched_fragments": 106, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Microvirga lenta", "strain": "strain=SM9", "accession": "GCA_020532555.1", "taxid": 2881337, "species_taxid": 2881337, "relation_to_type": "type", "validated": true, "ani": 75.9442, "matched_fragments": 77, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hypericibacter adhaerens", "strain": "strain=R5959", "accession": "GCA_008728835.1", "taxid": 2602016, "species_taxid": 2602016, "relation_to_type": "type", "validated": true, "ani": 75.8566, "matched_fragments": 145, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanibaculum pacificum", "strain": "strain=MCCC 1A02656", "accession": "GCA_001618175.1", "taxid": 580166, "species_taxid": 580166, "relation_to_type": "type", "validated": true, "ani": 75.7994, "matched_fragments": 136, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium crusticola", "strain": "strain=KCTC 52305", "accession": "GCA_022179145.1", "taxid": 1697972, "species_taxid": 1697972, "relation_to_type": "type", "validated": true, "ani": 75.6152, "matched_fragments": 217, "total_fragments": 777, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum cavernae", "strain": "strain=K2W22B-5", "accession": 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