{ "type": "genome", "identifier": "GCA_913058555.1", "organism": "uncultured bacterium", "title": "uncultured bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_913058555.1", "bioproject": "PRJEB37807", "biosample": "SAMEA9695073", "wgs_master": "CAJXRJ000000000.1", "refseq_category": "na", "taxid": "77133", "species_taxid": "77133", "organism_name": "uncultured bacterium", "infraspecific_name": "", "isolate": "SRR3933245_bin.12_MetaBAT_v2.12.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/22", "asm_name": "SRR3933245_bin.12_MetaBAT_v2.12.1_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/913/058/555/GCA_913058555.1_SRR3933245_bin.12_MetaBAT_v2.12.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-22", "dateModified": "2021-09-22", "datePublished": "2021-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured bacterium" ], "sample_taxid": [ "77133" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada" ], "sample_host_location_id": [], "data_size": "2.103 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.29, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "7481222", "Number of Sequences": "1010", "Longest Sequences (bp)": "39041", "N50 (bp)": "9495", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.0", "Number of CDSs": "5053", "Average Protein Length": "380.5", "Coding Ratio (%)": "77.1", "Number of rRNAs": "2", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Posidoniimonas polymericola", "strain": "strain=Pla123a", "accession": "GCA_007859935.1", "taxid": 2528002, "species_taxid": 2528002, "relation_to_type": "type", "validated": true, "ani": 75.7112, "matched_fragments": 70, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Botrimarina mediterranea", "strain": "strain=Spa11", "accession": "GCA_007753265.1", "taxid": 2528022, "species_taxid": 2528022, "relation_to_type": "type", "validated": true, "ani": 75.4922, "matched_fragments": 57, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Phycisphaera mikurensis", "strain": "strain=DSM 103959", "accession": "GCA_014207395.1", "taxid": 547188, "species_taxid": 547188, "relation_to_type": "type", "validated": true, "ani": 75.1464, "matched_fragments": 60, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludisphaera rhizosphaereae", "strain": "strain=JC665", "accession": "GCA_011065895.1", "taxid": 2711216, "species_taxid": 2711216, "relation_to_type": "type", "validated": true, "ani": 75.1436, "matched_fragments": 69, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tautonia plasticadhaerens", "strain": "strain=ElP", "accession": "GCA_007752535.1", "taxid": 2527974, "species_taxid": 2527974, "relation_to_type": "type", "validated": true, "ani": 75.0039, "matched_fragments": 107, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paludisphaera soli", "strain": "strain=JC670", "accession": "GCA_011064595.1", "taxid": 2712865, "species_taxid": 2712865, "relation_to_type": "type", "validated": true, "ani": 74.9596, "matched_fragments": 102, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces taklimakanensis", "strain": "strain=TRM43335", "accession": "GCA_009709575.1", "taxid": 2569853, "species_taxid": 2569853, "relation_to_type": "type", "validated": true, "ani": 74.8572, "matched_fragments": 54, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum brasilense", "strain": "strain=Sp 7", "accession": "GCA_008274945.1", "taxid": 192, "species_taxid": 192, "relation_to_type": "type", "validated": true, "ani": 74.8378, "matched_fragments": 55, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum brasilense", "strain": "strain=Sp 7", "accession": "GCA_007827425.1", "taxid": 192, "species_taxid": 192, "relation_to_type": "type", "validated": true, "ani": 74.837, "matched_fragments": 56, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum brasilense", "strain": "strain=Sp 7", "accession": "GCA_002027385.1", "taxid": 192, "species_taxid": 192, "relation_to_type": "type", "validated": true, "ani": 74.6477, "matched_fragments": 54, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces fumanus", "strain": "strain=JCM 4477", "accession": "GCA_014655295.1", "taxid": 67302, "species_taxid": 67302, "relation_to_type": "type", "validated": true, "ani": 74.609, "matched_fragments": 81, "total_fragments": 1975, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.29, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_002862085.1", "gtdb_species": "s__GCA-2862085 sp002862085", "ani": 78.6363, "matched_fragments": 409, "total_fragments": 1975, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__GCA-2862085", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016779205.1", "gtdb_species": "s__GCA-2862085 sp016779205", "ani": 77.8659, "matched_fragments": 354, "total_fragments": 1975, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__GCA-2862085", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_007751475.1", "gtdb_species": "s__GCA-2862085 sp007751475", "ani": 77.8461, "matched_fragments": 441, "total_fragments": 1975, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__GCA-2862085", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_905480285.1", "gtdb_species": "s__GCA-2862085 sp905480285", "ani": 77.4493, "matched_fragments": 301, "total_fragments": 1975, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__GCA-2862085", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011524785.1", "gtdb_species": "s__GCA-2686945 sp011524785", "ani": 76.7745, "matched_fragments": 120, "total_fragments": 1975, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__GCA-2686945", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002720975.1", "gtdb_species": "s__GCA-2720975 sp002720975", "ani": 76.1805, "matched_fragments": 71, "total_fragments": 1975, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__GCA-2720975", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.24", "min_intra_species_ani": "96.24", "mean_intra_species_af": "0.74", "min_intra_species_af": "0.74", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_016712565.1", "gtdb_species": "s__JADJQU01 sp016712565", "ani": 75.9667, "matched_fragments": 130, "total_fragments": 1975, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__JADJQU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016795205.1", "gtdb_species": "s__JAEUHZ01 sp016795205", "ani": 75.9627, "matched_fragments": 113, "total_fragments": 1975, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__JAEUHZ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_004357655.1", "gtdb_species": "s__N075bin59 sp004357655", "ani": 75.9593, "matched_fragments": 131, "total_fragments": 1975, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__N075bin59", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002686265.1", "gtdb_species": "s__GCA-2686265 sp002686265", "ani": 75.7918, "matched_fragments": 125, "total_fragments": 1975, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__UBA1135;o__UBA1135;f__GCA-002686595;g__GCA-2686265", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016709545.1", "gtdb_species": "s__JADJMO01 sp016709545", "ani": 74.919, "matched_fragments": 116, "total_fragments": 1975, "gtdb_taxonomy": "d__Bacteria;p__Myxococcota;c__Polyangia;o__Polyangiales;f__JADJMO01;g__JADJMO01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.09", "min_intra_species_ani": "95.09", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Planctomycetota", "c__UBA1135", "o__UBA1135", "f__GCA-002686595", "g__GCA-2862085", "s__GCA-2862085 sp913058555" ], "_genome_taxon": [ "uncultured", "bacterium", "d__Bacteria", "p__Planctomycetota", "c__UBA1135", "o__UBA1135", "f__GCA-002686595", "g__GCA-2862085", "s__GCA-2862085 sp913058555", "Bacteria", "Planctomycetota", "UBA1135", "UBA1135", "GCA-002686595", "GCA-2862085", "GCA-2862085", "sp913058555" ], "_meo": [ { "id": "MEO_0000023", "label": "sea" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }