{ "type": "genome", "identifier": "GCA_913063325.1", "organism": "uncultured Colwellia sp.", "title": "uncultured Colwellia sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_913063325.1", "bioproject": "PRJEB37807", "biosample": "SAMEA9694995", "wgs_master": "CAJXYE000000000.1", "refseq_category": "na", "taxid": "154336", "species_taxid": "154336", "organism_name": "uncultured Colwellia sp.", "infraspecific_name": "", "isolate": "SRR3580187_bin.31_MetaBAT_v2.12.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/22", "asm_name": "SRR3580187_bin.31_MetaBAT_v2.12.1_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/913/063/325/GCA_913063325.1_SRR3580187_bin.31_MetaBAT_v2.12.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-22", "dateModified": "2021-09-22", "datePublished": "2021-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Colwellia sp." ], "sample_taxid": [ "154336" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.395 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 59.09, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4876813", "Number of Sequences": "126", "Longest Sequences (bp)": "183313", "N50 (bp)": "61057", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.7", "Number of CDSs": "4035", "Average Protein Length": "340.1", "Coding Ratio (%)": "84.4", "Number of rRNAs": "0", "Number of tRNAs": "20", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Colwellia demingiae", "strain": "strain=ACAM 459", "accession": "GCA_007954275.1", "taxid": 89401, "species_taxid": 89401, "relation_to_type": "type", "validated": true, "ani": 82.0197, "matched_fragments": 817, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia piezophila", "strain": "strain=ATCC BAA-637", "accession": "GCA_000378625.1", "taxid": 211668, "species_taxid": 211668, "relation_to_type": "type", "validated": true, "ani": 80.9327, "matched_fragments": 772, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia marinimaniae", "strain": "strain=MTCD1", "accession": "GCA_002207865.1", "taxid": 1513592, "species_taxid": 1513592, "relation_to_type": "type", "validated": true, "ani": 80.2895, "matched_fragments": 737, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia ponticola", "strain": "strain=OISW-25", "accession": "GCA_005885605.1", "taxid": 2304625, "species_taxid": 2304625, "relation_to_type": "type", "validated": true, "ani": 79.8381, "matched_fragments": 536, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia echini", "strain": "strain=A3", "accession": "GCA_002843355.2", "taxid": 1982103, "species_taxid": 1982103, "relation_to_type": "type", "validated": true, "ani": 79.1188, "matched_fragments": 439, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litorilituus sediminis", "strain": "strain=JCM 17549", "accession": "GCA_004295665.1", "taxid": 718192, "species_taxid": 718192, "relation_to_type": "type", "validated": true, "ani": 77.6161, "matched_fragments": 308, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litorilituus lipolyticus", "strain": "strain=RZ04", "accession": "GCA_006439335.1", "taxid": 2491017, "species_taxid": 2491017, "relation_to_type": "type", "validated": true, "ani": 77.4858, "matched_fragments": 309, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia hornerae", "strain": "strain=ACAM 607", "accession": "GCA_007954355.1", "taxid": 89402, "species_taxid": 89402, "relation_to_type": "type", "validated": true, "ani": 77.2504, "matched_fragments": 221, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia chukchiensis", "strain": "strain=CGMCC 1.9127", "accession": "GCA_900109795.1", "taxid": 641665, "species_taxid": 641665, "relation_to_type": "type", "validated": true, "ani": 76.5694, "matched_fragments": 137, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Colwellia chukchiensis", "strain": "strain=CGMCC 1.9127", "accession": "GCA_002104455.1", "taxid": 641665, "species_taxid": 641665, "relation_to_type": "type", "validated": true, "ani": 76.5433, "matched_fragments": 140, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoalteromonas distincta", "strain": "strain=ATCC 700518", "accession": "GCA_000814675.1", "taxid": 77608, "species_taxid": 77608, "relation_to_type": "type", "validated": true, "ani": 75.9786, "matched_fragments": 59, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Shewanella sairae", "strain": "strain=LMG 21408", "accession": "GCA_023283535.1", "taxid": 190310, "species_taxid": 190310, "relation_to_type": "type", "validated": true, "ani": 75.7146, "matched_fragments": 50, "total_fragments": 1565, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 59.09, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002836255.1", "gtdb_species": "s__Colwellia sp002836255", "ani": 83.0817, "matched_fragments": 929, "total_fragments": 1565, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Alteromonadaceae;g__Colwellia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002836775.1", "gtdb_species": "s__Colwellia sp002836775", "ani": 82.8469, "matched_fragments": 874, "total_fragments": 1565, "gtdb_taxonomy": 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