{ "type": "genome", "identifier": "GCA_913774635.1", "organism": "uncultured Pantoea sp.", "title": "uncultured Pantoea sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY", "publication": [ {} ], "properties": { "assembly_accession": "GCA_913774635.1", "bioproject": "PRJEB45634", "biosample": "SAMEA8943916", "wgs_master": "CAJYHJ000000000.1", "refseq_category": "na", "taxid": "218084", "species_taxid": "218084", "organism_name": "uncultured Pantoea sp.", "infraspecific_name": "", "isolate": "S3C18100_SP226", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/11", "asm_name": "S3C18100_SP226", "submitter": "INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/913/774/635/GCA_913774635.1_S3C18100_SP226", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-11", "dateModified": "2021-11-11", "datePublished": "2021-11-11", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Pantoea sp." ], "sample_taxid": [ "218084" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.369 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4792973", "Number of Sequences": "72", "Longest Sequences (bp)": "349542", "N50 (bp)": "137529", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "53.5", "Number of CDSs": "4389", "Average Protein Length": "308.2", "Coding Ratio (%)": "84.7", "Number of rRNAs": "1", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pantoea ananatis", "strain": "strain=LMG 2665", "accession": "GCA_000710035.2", "taxid": 553, "species_taxid": 553, "relation_to_type": "type", "validated": true, "ani": 96.6111, "matched_fragments": 1391, "total_fragments": 1557, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pantoea ananatis", "strain": "strain=LMG 2665", "accession": "GCA_000661975.1", "taxid": 553, "species_taxid": 553, "relation_to_type": "type", "validated": true, "ani": 96.5809, "matched_fragments": 1395, "total_fragments": 1557, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pantoea allii", "strain": "strain=LMG 24248", "accession": "GCA_002307475.1", "taxid": 574096, "species_taxid": 574096, "relation_to_type": "type", "validated": true, "ani": 88.3134, "matched_fragments": 1314, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea allii", "strain": "strain=LMG 24248", "accession": "GCA_002095545.1", "taxid": 574096, "species_taxid": 574096, "relation_to_type": "type", "validated": true, "ani": 88.3092, "matched_fragments": 1301, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea stewartii subsp. stewartii", "strain": "strain=CCUG 26359", "accession": "GCA_008801695.1", "taxid": 66271, "species_taxid": 66269, "relation_to_type": "type", "validated": true, "ani": 85.2131, "matched_fragments": 1091, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea stewartii subsp. indologenes", "strain": "strain=LMG 2632", "accession": "GCA_000757405.2", "taxid": 66270, "species_taxid": 66269, "relation_to_type": "type", "validated": true, "ani": 85.0678, "matched_fragments": 1200, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea deleyi", "strain": "strain=LMG24200", "accession": "GCA_022647325.1", "taxid": 470932, "species_taxid": 470932, "relation_to_type": "type", "validated": true, "ani": 81.2438, "matched_fragments": 853, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia aphidicola", "strain": "strain=X001", "accession": "GCA_024169515.1", "taxid": 68334, "species_taxid": 68334, "relation_to_type": "type", "validated": true, "ani": 79.0162, "matched_fragments": 548, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter sichuanensis", "strain": "strain=WCHECL1597", "accession": "GCA_025002605.1", "taxid": 2071710, "species_taxid": 2071710, "relation_to_type": "type", "validated": true, "ani": 78.4124, "matched_fragments": 373, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter roggenkampii", "strain": "strain=DSM 16690", "accession": "GCA_024390995.1", "taxid": 1812935, "species_taxid": 1812935, "relation_to_type": "type", "validated": true, "ani": 78.2526, "matched_fragments": 373, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pluralibacter gergoviae", "strain": "strain=NBRC 105706", "accession": "GCA_001598855.1", "taxid": 61647, "species_taxid": 61647, "relation_to_type": "type", "validated": true, "ani": 78.0563, "matched_fragments": 361, "total_fragments": 1557, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000710035.2", "gtdb_species": "s__Pantoea ananatis", "ani": 96.6111, "matched_fragments": 1391, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.81", "min_intra_species_ani": "96.45", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.81", "num_clustered_genomes": 152, "status": "conclusive" }, { "accession": "GCF_002307475.1", "gtdb_species": "s__Pantoea allii", "ani": 88.3148, "matched_fragments": 1314, "total_fragments": 1557, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Pantoea", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.91", "min_intra_species_ani": "98.49", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_008801695.1", 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"Enterobacteriaceae", "Pantoea", "Pantoea", "ananatis" ], "_meo": [ { "id": "MEO_0000419", "label": "plant body associated" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }