{ "type": "genome", "identifier": "GCA_913777445.1", "organism": "uncultured Exiguobacterium sp.", "title": "uncultured Exiguobacterium sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY", "publication": [ {} ], "properties": { "assembly_accession": "GCA_913777445.1", "bioproject": "PRJEB45634", "biosample": "SAMEA8944524", "wgs_master": "CAJYRN000000000.1", "refseq_category": "na", "taxid": "202669", "species_taxid": "202669", "organism_name": "uncultured Exiguobacterium sp.", "infraspecific_name": "", "isolate": "SP266_1_metabat2_genome_mining.36", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/11/12", "asm_name": "SP266_1_metabat2_genome_mining.36", "submitter": "INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/913/777/445/GCA_913777445.1_SP266_1_metabat2_genome_mining.36", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-11-12", "dateModified": "2021-11-12", "datePublished": "2021-11-12", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Exiguobacterium sp." ], "sample_taxid": [ "202669" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.821 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2864653", "Number of Sequences": "168", "Longest Sequences (bp)": "106594", "N50 (bp)": "25996", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "47.2", "Number of CDSs": "2815", "Average Protein Length": "288.4", "Coding Ratio (%)": "85.0", "Number of rRNAs": "1", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Exiguobacterium enclense", "strain": "strain=NIO-1109", "accession": "GCA_001456895.1", "taxid": 1017277, "species_taxid": 1017277, "relation_to_type": "type", "validated": true, "ani": 93.739, "matched_fragments": 838, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium enclense", "strain": "strain=NIO-1109", "accession": "GCA_900096925.1", "taxid": 1017277, "species_taxid": 1017277, "relation_to_type": "type", "validated": true, "ani": 93.739, "matched_fragments": 838, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium indicum", "strain": "strain=HHS 31", "accession": "GCA_001939065.1", "taxid": 296995, "species_taxid": 296995, "relation_to_type": "type", "validated": true, "ani": 93.7134, "matched_fragments": 843, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium acetylicum", "strain": "strain=DSM 20416", "accession": "GCA_000702605.1", "taxid": 41170, "species_taxid": 41170, "relation_to_type": "suspected-type", "validated": true, "ani": 92.2711, "matched_fragments": 804, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium oxidotolerans", "strain": "strain=JCM 12280", "accession": "GCA_000702625.1", "taxid": 223958, "species_taxid": 223958, "relation_to_type": "type", "validated": true, "ani": 81.2085, "matched_fragments": 502, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium undae", "strain": "strain=DSM 14481", "accession": "GCA_000620805.1", "taxid": 169177, "species_taxid": 169177, "relation_to_type": "type", "validated": true, "ani": 81.0592, "matched_fragments": 514, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium artemiae", "strain": "strain=9AN", "accession": "GCA_025234645.1", "taxid": 340145, "species_taxid": 340145, "relation_to_type": "type", "validated": true, "ani": 80.9998, "matched_fragments": 457, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Exiguobacterium aestuarii", "strain": "strain=TF_16", "accession": "GCA_025234735.1", "taxid": 273527, "species_taxid": 273527, "relation_to_type": "type", "validated": true, "ani": 77.3252, "matched_fragments": 119, "total_fragments": 874, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001939065.1", "gtdb_species": "s__Exiguobacterium_A indicum", "ani": 93.7134, "matched_fragments": 843, "total_fragments": 874, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.62", "min_intra_species_ani": "95.33", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 22, "status": "-" }, { "accession": "GCF_000702605.1", "gtdb_species": "s__Exiguobacterium_A acetylicum", "ani": 92.2801, "matched_fragments": 803, "total_fragments": 874, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.66", "min_intra_species_ani": "95.06", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCF_001423965.1", "gtdb_species": "s__Exiguobacterium_A sp001423965", "ani": 91.3757, "matched_fragments": 786, "total_fragments": 874, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.21", "min_intra_species_ani": "96.36", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.93", "num_clustered_genomes": 17, "status": "-" }, { "accession": "GCF_001275385.1", "gtdb_species": "s__Exiguobacterium_A sp001275385", "ani": 89.9524, "matched_fragments": 825, "total_fragments": 874, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000702625.1", "gtdb_species": "s__Exiguobacterium_A oxidotolerans", "ani": 81.2136, "matched_fragments": 501, "total_fragments": 874, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.91", "min_intra_species_ani": "95.68", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.87", "num_clustered_genomes": 15, "status": "-" }, { "accession": "GCF_000620805.1", "gtdb_species": "s__Exiguobacterium_A undae", "ani": 81.0462, "matched_fragments": 515, "total_fragments": 874, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.90", "min_intra_species_ani": "97.06", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_018618755.1", "gtdb_species": "s__Exiguobacterium_A sp018618755", "ani": 81.0087, "matched_fragments": 506, "total_fragments": 874, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003339585.1", "gtdb_species": "s__Exiguobacterium_A sp003339585", "ani": 80.9957, "matched_fragments": 508, "total_fragments": 874, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000620865.1", "gtdb_species": "s__Exiguobacterium_A sibiricum_A", "ani": 80.9468, "matched_fragments": 502, "total_fragments": 874, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001870785.1", "gtdb_species": "s__Exiguobacterium_A sp001870785", "ani": 80.7327, "matched_fragments": 497, "total_fragments": 874, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Exiguobacterales;f__Exiguobacteraceae;g__Exiguobacterium_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.092, "cell_length": 0.326, "doubling_h": null, "growth_tmp": 28.285, "optimum_tmp": 34.2, "optimum_ph": 7.625, "genome_size": 3136503.296, "gc_content": 45.862, "coding_genes": 2872.166, "rRNA16S_genes": 9.0, "tRNA_genes": 68.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 0.857, "range_salinity": 0.0, "facultative_respiration": 0.285, "anaerobic_respiration": 0.0, "aerobic_respiration": 0.714, "mesophilic_range_tmp": 0.5, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.5, "bacillus_cell_shape": 0.857, "coccus_cell_shape": 0.142, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota", "c__Bacilli", "o__Exiguobacterales", "f__Exiguobacteraceae", "g__Exiguobacterium_A", "s__Exiguobacterium_A sp913775715" ], "_genome_taxon": [ "uncultured", "Exiguobacterium", "sp.", "d__Bacteria", "p__Bacillota", "c__Bacilli", "o__Exiguobacterales", "f__Exiguobacteraceae", "g__Exiguobacterium_A", "s__Exiguobacterium_A sp913775715", "Bacteria", "Bacillota", "Bacilli", "Exiguobacterales", "Exiguobacteraceae", "Exiguobacterium", "A", "Exiguobacterium", "A", "sp913775715" ], "_meo": [ { "id": "MEO_0000419", "label": "plant body associated" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }