{ "type": "genome", "identifier": "GCA_913778515.1", "organism": "uncultured Acinetobacter sp.", "title": "uncultured Acinetobacter sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY", "publication": [ {} ], "properties": { "assembly_accession": "GCA_913778515.1", "bioproject": "PRJEB45634", "biosample": "SAMEA8943843", "wgs_master": "CAJYUR000000000.1", "refseq_category": "na", "taxid": "165433", "species_taxid": "165433", "organism_name": "uncultured Acinetobacter sp.", "infraspecific_name": "", "isolate": "S3C4298_SP309", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/08/25", "asm_name": "S3C4298_SP309", "submitter": "INSTITUTE OF ENVIRONMENTAL BIOTECHNOLOGY, GRAZ UNIVERSITY OF TECHNOLOGY", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/913/778/515/GCA_913778515.1_S3C4298_SP309", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-08-25", "dateModified": "2021-08-25", "datePublished": "2021-08-25", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Acinetobacter sp." ], "sample_taxid": [ "165433" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "1.215 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "4279843", "Number of Sequences": "61", "Longest Sequences (bp)": "297592", "N50 (bp)": "89284", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "37.8", "Number of CDSs": "3918", "Average Protein Length": "304.6", "Coding Ratio (%)": "83.6", "Number of rRNAs": "1", "Number of tRNAs": "58", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter bereziniae", "strain": "strain=CIP 70.12", "accession": "GCA_000368925.1", "taxid": 106648, "species_taxid": 106648, "relation_to_type": "type", "validated": true, "ani": 98.1078, "matched_fragments": 1294, "total_fragments": 1400, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CIP 63.46", "accession": "GCA_000368145.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 83.6741, "matched_fragments": 1015, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CCUG 2491", "accession": "GCA_008802215.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 83.6506, "matched_fragments": 1023, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter wuhouensis", "strain": "strain=WCHA60", "accession": "GCA_001696605.3", "taxid": 1879050, "species_taxid": 1879050, "relation_to_type": "type", "validated": true, "ani": 81.9852, "matched_fragments": 757, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter piscicola", "strain": "strain=LW15", "accession": "GCA_002233755.1", "taxid": 2006115, "species_taxid": 2006115, "relation_to_type": "type", "validated": true, "ani": 81.6848, "matched_fragments": 695, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter rongchengensis", "strain": "strain=WCHAc060115", "accession": "GCA_003611475.1", "taxid": 2419601, "species_taxid": 2419601, "relation_to_type": "type", "validated": true, "ani": 81.5726, "matched_fragments": 686, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter sichuanensis", "strain": "strain=WCHAc060041", "accession": "GCA_003024515.2", "taxid": 2136183, "species_taxid": 2136183, "relation_to_type": "type", "validated": true, "ani": 80.5719, "matched_fragments": 600, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 79.9891, "matched_fragments": 495, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter johnsonii", "strain": "strain=NCTC10308", "accession": "GCA_900444855.1", "taxid": 40214, "species_taxid": 40214, "relation_to_type": "suspected-type", "validated": true, "ani": 79.1385, "matched_fragments": 426, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter junii", "strain": "strain=NCTC10307", "accession": "GCA_900444875.1", "taxid": 40215, "species_taxid": 40215, "relation_to_type": "type", "validated": true, "ani": 78.9494, "matched_fragments": 359, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter haemolyticus", "strain": "strain=NCTC10305", "accession": "GCA_900444835.1", "taxid": 29430, "species_taxid": 29430, "relation_to_type": "type", "validated": true, "ani": 78.8527, "matched_fragments": 354, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 78.8412, "matched_fragments": 391, "total_fragments": 1400, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000368925.1", "gtdb_species": "s__Acinetobacter bereziniae", "ani": 98.0896, "matched_fragments": 1295, "total_fragments": 1400, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "97.29", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 53, "status": "conclusive" }, { "accession": "GCA_009912575.1", "gtdb_species": "s__Acinetobacter bereziniae_A", "ani": 90.9996, "matched_fragments": 1051, "total_fragments": 1400, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_016508585.1", "gtdb_species": "s__Acinetobacter baumannii_B", "ani": 90.0601, "matched_fragments": 1110, "total_fragments": 1400, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.90", "min_intra_species_ani": "99.88", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.96", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_000368145.1", "gtdb_species": "s__Acinetobacter guillouiae", "ani": 83.6926, "matched_fragments": 1013, "total_fragments": 1400, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.78", "min_intra_species_ani": "96.36", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 14, "status": "-" }, { "accession": "GCF_001696605.3", "gtdb_species": "s__Acinetobacter wuhouensis", "ani": 81.9752, "matched_fragments": 758, "total_fragments": 1400, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.82", "min_intra_species_ani": "96.71", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCF_002233755.1", "gtdb_species": "s__Acinetobacter piscicola", "ani": 81.6848, "matched_fragments": 695, "total_fragments": 1400, "gtdb_taxonomy": 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"d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003268395.1", "gtdb_species": "s__Acinetobacter sp003268395", "ani": 80.4891, "matched_fragments": 578, "total_fragments": 1400, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.019, "cell_length": 0.052, "doubling_h": -0.144, "growth_tmp": 30.578, "optimum_tmp": 29.638, "optimum_ph": 7.1, "genome_size": 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"Moraxellaceae", "Acinetobacter", "Acinetobacter", "bereziniae" ], "_meo": [ { "id": "MEO_0000419", "label": "plant body associated" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }