{ "type": "genome", "identifier": "GCA_916049775.1", "organism": "Neisseria flavescens", "title": "Neisseria flavescens", "description": "contaminated; derived from metagenome; fragmented assembly", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_916049775.1", "bioproject": "PRJEB41354", "biosample": "SAMEA9943330", "wgs_master": "CAJZIT000000000.1", "refseq_category": "na", "taxid": "484", "species_taxid": "484", "organism_name": "Neisseria flavescens", "infraspecific_name": "", "isolate": "ERR2765004_bin.4_metaWRAP_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/22", "asm_name": "ERR2765004_bin.4_metaWRAP_v1.1_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/049/775/GCA_916049775.1_ERR2765004_bin.4_metaWRAP_v1.1_MAG", "excluded_from_refseq": "contaminated; derived from metagenome; fragmented assembly", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-22", "dateModified": "2021-09-22", "datePublished": "2021-09-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria flavescens" ], "sample_taxid": [ "484" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "0.308 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 35.65, "contamination": 2.08, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1082001", "Number of Sequences": "261", "Longest Sequences (bp)": "13093", "N50 (bp)": "4088", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.8", "Number of CDSs": "819", "Average Protein Length": "282.5", "Coding Ratio (%)": "64.2", "Number of rRNAs": "0", "Number of tRNAs": "11", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria perflava", "strain": "strain=CCUG 17915", "accession": "GCA_023472875.1", "taxid": 33053, "species_taxid": 33053, "relation_to_type": "suspected-type", "validated": true, "ani": 94.4839, "matched_fragments": 208, "total_fragments": 225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria subflava", "strain": "strain=ATCC 49275", "accession": "GCA_005221305.1", "taxid": 28449, "species_taxid": 28449, "relation_to_type": "type", "validated": true, "ani": 93.369, "matched_fragments": 203, "total_fragments": 225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria flavescens", "strain": "strain=NCTC8263", "accession": "GCA_900453805.1", "taxid": 484, "species_taxid": 484, "relation_to_type": "type", "validated": true, "ani": 92.9951, "matched_fragments": 204, "total_fragments": 225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria flavescens", "strain": "strain=ATCC 13120", "accession": "GCA_005221285.1", "taxid": 484, "species_taxid": 484, "relation_to_type": "type", "validated": true, "ani": 92.9644, "matched_fragments": 203, "total_fragments": 225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria cinerea", "strain": "strain=ATCC 14685", "accession": "GCA_000173895.1", "taxid": 483, "species_taxid": 483, "relation_to_type": "type", "validated": true, "ani": 83.5658, "matched_fragments": 150, "total_fragments": 225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria cinerea", "strain": "strain=CCUG 2156", "accession": "GCA_021025975.1", "taxid": 483, "species_taxid": 483, "relation_to_type": "type", "validated": true, "ani": 83.5619, "matched_fragments": 151, "total_fragments": 225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria sicca", "strain": "strain=DSM 17713", "accession": "GCA_014054945.1", "taxid": 490, "species_taxid": 490, "relation_to_type": "suspected-type", "validated": true, "ani": 83.5182, "matched_fragments": 181, "total_fragments": 225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria sicca", "strain": "strain=ATCC 29256", "accession": "GCA_000174655.1", "taxid": 490, "species_taxid": 490, "relation_to_type": "suspected-type", "validated": true, "ani": 83.5006, "matched_fragments": 178, "total_fragments": 225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_022749515.1", "taxid": 1056807, "species_taxid": 1056807, "relation_to_type": "type", "validated": true, "ani": 83.4791, "matched_fragments": 182, "total_fragments": 225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_000813705.1", "taxid": 1056807, "species_taxid": 1056807, "relation_to_type": "type", "validated": true, "ani": 83.4301, "matched_fragments": 177, "total_fragments": 225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria cinerea", "strain": "strain=NCTC10294", "accession": "GCA_900475315.1", "taxid": 483, "species_taxid": 483, "relation_to_type": "type", "validated": true, "ani": 83.4036, "matched_fragments": 148, "total_fragments": 225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria cinerea", "strain": "strain=FDAARGOS_871", "accession": "GCA_016028715.1", "taxid": 483, "species_taxid": 483, "relation_to_type": "type", "validated": true, "ani": 83.358, "matched_fragments": 150, "total_fragments": 225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria meningitidis", "strain": "strain=PartJ-Nmeningitidis-RM8376", "accession": "GCA_022869645.1", "taxid": 487, "species_taxid": 487, "relation_to_type": "type", "validated": true, "ani": 82.5428, "matched_fragments": 160, "total_fragments": 225, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria elongata", "strain": "strain=NCTC10660", "accession": "GCA_900453895.1", "taxid": 495, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 80.0761, "matched_fragments": 129, "total_fragments": 225, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 35.65, "contamination": 2.08, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_013267835.1", "gtdb_species": "s__Neisseria sp000186165", "ani": 95.8759, "matched_fragments": 205, "total_fragments": 225, "gtdb_taxonomy": 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