{
    "type": "genome",
    "identifier": "GCA_916049995.1",
    "organism": "Prevotella nigrescens",
    "title": "Prevotella nigrescens",
    "description": "derived from metagenome; genome length too small",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_916049995.1",
        "bioproject": "PRJEB41354",
        "biosample": "SAMEA9943323",
        "wgs_master": "CAJZJJ000000000.1",
        "refseq_category": "na",
        "taxid": "28133",
        "species_taxid": "28133",
        "organism_name": "Prevotella nigrescens",
        "infraspecific_name": "",
        "isolate": "ERR2764794_bin.2_metaWRAP_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/22",
        "asm_name": "ERR2764794_bin.2_metaWRAP_v1.1_MAG",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/049/995/GCA_916049995.1_ERR2764794_bin.2_metaWRAP_v1.1_MAG",
        "excluded_from_refseq": "derived from metagenome; genome length too small",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-22",
    "dateModified": "2021-09-22",
    "datePublished": "2021-09-22",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Prevotella nigrescens"
        ],
        "sample_taxid": [
            "28133"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany"
        ],
        "sample_host_location_id": [],
        "data_size": "0.345 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 41.2,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1197433",
        "Number of Sequences": "245",
        "Longest Sequences (bp)": "18031",
        "N50 (bp)": "5340",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.7",
        "Number of CDSs": "775",
        "Average Protein Length": "306.3",
        "Coding Ratio (%)": "59.5",
        "Number of rRNAs": "0",
        "Number of tRNAs": "7",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Prevotella nigrescens",
                "strain": "strain=NCTC9336",
                "accession": "GCA_900454985.1",
                "taxid": 28133,
                "species_taxid": 28133,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.9129,
                "matched_fragments": 261,
                "total_fragments": 276,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Prevotella nigrescens",
                "strain": "strain=ATCC 33563",
                "accession": "GCA_000220235.1",
                "taxid": 28133,
                "species_taxid": 28133,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.9062,
                "matched_fragments": 262,
                "total_fragments": 276,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Prevotella nigrescens",
                "strain": "strain=FDAARGOS_1486",
                "accession": "GCA_019930605.1",
                "taxid": 28133,
                "species_taxid": 28133,
                "relation_to_type": "type",
                "validated": true,
                "ani": 97.8416,
                "matched_fragments": 263,
                "total_fragments": 276,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Prevotella intermedia",
                "strain": "strain=DSM 20706",
                "accession": "GCA_000439065.1",
                "taxid": 28131,
                "species_taxid": 28131,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.8596,
                "matched_fragments": 216,
                "total_fragments": 276,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella intermedia",
                "strain": "strain=ATCC 25611",
                "accession": "GCA_000519165.1",
                "taxid": 28131,
                "species_taxid": 28131,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.7797,
                "matched_fragments": 219,
                "total_fragments": 276,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 41.2,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000220235.1",
                "gtdb_species": "s__Prevotella nigrescens",
                "ani": 97.9062,
                "matched_fragments": 262,
                "total_fragments": 276,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.14",
                "min_intra_species_ani": "97.70",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 13,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001953955.1",
                "gtdb_species": "s__Prevotella intermedia",
                "ani": 85.9696,
                "matched_fragments": 211,
                "total_fragments": 276,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.61",
                "min_intra_species_ani": "96.13",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 34,
                "status": "-"
            },
            {
                "accession": "GCF_000220255.1",
                "gtdb_species": "s__Prevotella pallens",
                "ani": 83.9936,
                "matched_fragments": 216,
                "total_fragments": 276,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "96.89",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 40,
                "status": "-"
            },
            {
                "accession": "GCF_000613945.1",
                "gtdb_species": "s__Prevotella falsenii",
                "ani": 83.3517,
                "matched_fragments": 221,
                "total_fragments": 276,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000614025.1",
                "gtdb_species": "s__Prevotella aurantiaca",
                "ani": 80.9933,
                "matched_fragments": 188,
                "total_fragments": 276,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.47",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.176,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 32.5,
        "optimum_ph": 7.109,
        "genome_size": 2917432.4,
        "gc_content": 42.833,
        "coding_genes": 2508.172,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 50.875,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Prevotella",
        "s__Prevotella nigrescens"
    ],
    "_genome_taxon": [
        "Prevotella",
        "nigrescens",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Prevotella",
        "s__Prevotella nigrescens",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Prevotella",
        "Prevotella",
        "nigrescens"
    ],
    "_meo": [
        {
            "id": "MEO_0000060",
            "label": "saliva"
        }
    ],
    "quality": 2,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f"
}