{ "type": "genome", "identifier": "GCA_916438445.1", "organism": "uncultured Mobiluncus sp.", "title": "uncultured Mobiluncus sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "Antimicrobial Resistance Research Center, National Institute of Infectious Diseases", "publication": [ {} ], "properties": { "assembly_accession": "GCA_916438445.1", "bioproject": "PRJDB9452", "biosample": "SAMEA10110162", "wgs_master": "CAKAGR000000000.1", "refseq_category": "na", "taxid": "293425", "species_taxid": "293425", "organism_name": "uncultured Mobiluncus sp.", "infraspecific_name": "", "isolate": "DRR214961_bin.9_metaWRAP_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2021/09/29", "asm_name": "DRR214961_bin.9_metaWRAP_v1.1_MAG", "submitter": "Antimicrobial Resistance Research Center, National Institute of Infectious Diseases", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/438/445/GCA_916438445.1_DRR214961_bin.9_metaWRAP_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2021-09-29", "dateModified": "2021-09-29", "datePublished": "2021-09-29", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Mobiluncus sp." ], "sample_taxid": [ "293425" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.528 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 87.04, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "1873353", "Number of Sequences": "1", "Longest Sequences (bp)": "1873353", "N50 (bp)": "1873353", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.7", "Number of CDSs": "2258", "Average Protein Length": "236.5", "Coding Ratio (%)": "85.5", "Number of rRNAs": "6", "Number of tRNAs": "46", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mobiluncus curtisii subsp. curtisii", "strain": "strain=NCTC11656", "accession": "GCA_900453315.1", "taxid": 144177, "species_taxid": 2051, "relation_to_type": "suspected-type", "validated": true, "ani": 79.9234, "matched_fragments": 92, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mobiluncus curtisii", "strain": "strain=FDAARGOS_1127", "accession": "GCA_016725225.1", "taxid": 2051, "species_taxid": 2051, "relation_to_type": "suspected-type", "validated": true, "ani": 79.7163, "matched_fragments": 90, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mobiluncus curtisii subsp. curtisii", "strain": "strain=ATCC 35241", "accession": "GCA_000146285.1", "taxid": 144177, "species_taxid": 2051, "relation_to_type": "suspected-type", "validated": true, "ani": 79.3339, "matched_fragments": 90, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mobiluncus mulieris", "strain": "strain=NCTC11658", "accession": "GCA_900453215.1", "taxid": 2052, "species_taxid": 2052, "relation_to_type": "type", "validated": true, "ani": 78.9809, "matched_fragments": 95, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mobiluncus holmesii", "strain": "strain=NCTC11657", "accession": "GCA_900453235.1", "taxid": 144178, "species_taxid": 144178, "relation_to_type": "suspected-type", "validated": true, "ani": 78.8814, "matched_fragments": 94, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mobiluncus holmesii", "strain": "strain=ATCC 35242", "accession": "GCA_000185445.1", "taxid": 144178, "species_taxid": 144178, "relation_to_type": "suspected-type", "validated": true, "ani": 78.5141, "matched_fragments": 93, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mobiluncus mulieris", "strain": "strain=ATCC 35243", "accession": "GCA_000160615.1", "taxid": 2052, "species_taxid": 2052, "relation_to_type": "type", "validated": true, "ani": 77.9319, "matched_fragments": 92, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mobiluncus porci", "strain": "strain=RF-GAM-744-WT-7", "accession": "GCA_009695935.1", "taxid": 2652278, "species_taxid": 2652278, "relation_to_type": "type", "validated": true, "ani": 77.3646, "matched_fragments": 92, "total_fragments": 624, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 87.04, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000146285.1", "gtdb_species": "s__Mobiluncus curtisii", "ani": 79.3339, "matched_fragments": 90, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Mobiluncus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.67", "min_intra_species_ani": "96.00", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.91", "num_clustered_genomes": 18, "status": "-" }, { "accession": "GCF_000160615.1", "gtdb_species": "s__Mobiluncus mulieris", "ani": 77.9319, "matched_fragments": 92, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Mobiluncus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.64", "min_intra_species_ani": "97.66", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.86", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCF_009695935.1", "gtdb_species": "s__Mobiluncus porci", "ani": 77.3646, "matched_fragments": 92, "total_fragments": 624, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Mobiluncus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.398, "cell_length": 0.349, "doubling_h": null, "growth_tmp": 37.0, "optimum_tmp": 37.0, "optimum_ph": null, "genome_size": 2303951.2, "gc_content": 55.326, "coding_genes": 1844.0, "rRNA16S_genes": 2.0, "tRNA_genes": 46.0, "gram_stain": 1.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 1.0, "aerobic_respiration": 0.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Actinomycetales", "f__Actinomycetaceae", "g__Mobiluncus", "s__Mobiluncus sp916438445" ], "_genome_taxon": [ "uncultured", "Mobiluncus", "sp.", "d__Bacteria", "p__Actinomycetota", "c__Actinomycetes", "o__Actinomycetales", "f__Actinomycetaceae", "g__Mobiluncus", "s__Mobiluncus sp916438445", "Bacteria", "Actinomycetota", "Actinomycetes", "Actinomycetales", "Actinomycetaceae", "Mobiluncus", "Mobiluncus", "sp916438445" ], "_meo": [ { "id": "MEO_0000617", "label": "saliva" } ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }