{
    "type": "genome",
    "identifier": "GCA_916438585.1",
    "organism": "uncultured Leptotrichia sp.",
    "title": "uncultured Leptotrichia sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Antimicrobial Resistance Research Center, National Institute of Infectious Diseases",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_916438585.1",
        "bioproject": "PRJDB9452",
        "biosample": "SAMEA10110240",
        "wgs_master": "CAKAFQ000000000.1",
        "refseq_category": "na",
        "taxid": "159271",
        "species_taxid": "159271",
        "organism_name": "uncultured Leptotrichia sp.",
        "infraspecific_name": "",
        "isolate": "DRR214962_bin.4_metaWRAP_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/29",
        "asm_name": "DRR214962_bin.4_metaWRAP_v1.1_MAG",
        "submitter": "Antimicrobial Resistance Research Center, National Institute of Infectious Diseases",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/438/585/GCA_916438585.1_DRR214962_bin.4_metaWRAP_v1.1_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-29",
    "dateModified": "2021-09-29",
    "datePublished": "2021-09-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Leptotrichia sp."
        ],
        "sample_taxid": [
            "159271"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not provided"
        ],
        "sample_host_location_id": [],
        "data_size": "0.565 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.45,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2126997",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2126997",
        "N50 (bp)": "2126997",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "28.5",
        "Number of CDSs": "2246",
        "Average Protein Length": "214.5",
        "Coding Ratio (%)": "68.0",
        "Number of rRNAs": "15",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "5"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Leptotrichia wadei",
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                "species_taxid": 157687,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 387,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia wadei",
                "strain": "strain=DSM 19758",
                "accession": "GCA_000373345.1",
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                "species_taxid": 157687,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.1044,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia shahii",
                "strain": "strain=JCM16776",
                "accession": "GCA_008327825.1",
                "taxid": 157691,
                "species_taxid": 157691,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.9069,
                "matched_fragments": 359,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia shahii",
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                "accession": "GCA_000373045.1",
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                "species_taxid": 157691,
                "relation_to_type": "type",
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                "ani": 82.5251,
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                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia buccalis",
                "strain": "strain=DSM 1135",
                "accession": "GCA_000023905.1",
                "taxid": 40542,
                "species_taxid": 40542,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8272,
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                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia massiliensis",
                "strain": "strain=Marseille-P3007",
                "accession": "GCA_900104625.1",
                "taxid": 1852388,
                "species_taxid": 1852388,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4705,
                "matched_fragments": 328,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia trevisanii",
                "strain": "strain=DSM 22070",
                "accession": "GCA_000482505.1",
                "taxid": 109328,
                "species_taxid": 109328,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.4138,
                "matched_fragments": 331,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia hofstadii",
                "strain": "strain=JCM16775",
                "accession": "GCA_007990525.1",
                "taxid": 157688,
                "species_taxid": 157688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.3062,
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                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Leptotrichia hofstadii",
                "strain": "strain=DSM 21651",
                "accession": "GCA_000428965.1",
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                "species_taxid": 157688,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.0684,
                "matched_fragments": 346,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium beijerinckii",
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                "accession": "GCA_018223745.1",
                "taxid": 1520,
                "species_taxid": 1520,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 75.8247,
                "matched_fragments": 65,
                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium beijerinckii",
                "strain": "strain=NCTC13035",
                "accession": "GCA_900447025.1",
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                "species_taxid": 1520,
                "relation_to_type": "suspected-type",
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                "ani": 75.5951,
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                "total_fragments": 708,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Clostridium beijerinckii",
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                "accession": "GCA_002006445.1",
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                "species_taxid": 1520,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 74.8867,
                "matched_fragments": 53,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
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            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
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                "accession": "GCF_018128225.1",
                "gtdb_species": "s__Leptotrichia sp018128225",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
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                "num_clustered_genomes": 1,
                "status": "conclusive"
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            {
                "accession": "GCF_002240055.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
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            },
            {
                "accession": "GCF_001553645.1",
                "gtdb_species": "s__Leptotrichia sp001553645",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
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                "mean_intra_species_af": "N/A",
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            },
            {
                "accession": "GCF_007990445.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
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            },
            {
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                "matched_fragments": 363,
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            {
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Fusobacteriota;c__Fusobacteriia;o__Fusobacteriales;f__Leptotrichiaceae;g__Leptotrichia",
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                "num_clustered_genomes": 3,
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.224,
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        "optimum_tmp": 37.2,
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        "coding_genes": 2196.333,
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        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
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    "_gtdb_taxon": [
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        "p__Fusobacteriota",
        "c__Fusobacteriia",
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        "g__Leptotrichia",
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    "_genome_taxon": [
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        "sp.",
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        "p__Fusobacteriota",
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        "o__Fusobacteriales",
        "f__Leptotrichiaceae",
        "g__Leptotrichia",
        "s__Leptotrichia sp018128225",
        "Bacteria",
        "Fusobacteriota",
        "Fusobacteriia",
        "Fusobacteriales",
        "Leptotrichiaceae",
        "Leptotrichia",
        "Leptotrichia",
        "sp018128225"
    ],
    "_meo": [
        {
            "id": "MEO_0000617",
            "label": "saliva"
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    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}