{
    "type": "genome",
    "identifier": "GCA_916438615.1",
    "organism": "Actinomyces oris",
    "title": "Actinomyces oris",
    "description": "derived from metagenome; incomplete metagenome; many frameshifted proteins",
    "data type": "Genome sequencing and assembly",
    "organization": "Antimicrobial Resistance Research Center, National Institute of Infectious Diseases",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_916438615.1",
        "bioproject": "PRJDB9452",
        "biosample": "SAMEA10110153",
        "wgs_master": "CAKAFF000000000.1",
        "refseq_category": "na",
        "taxid": "544580",
        "species_taxid": "544580",
        "organism_name": "Actinomyces oris",
        "infraspecific_name": "",
        "isolate": "DRR214962_bin.33_metaWRAP_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/29",
        "asm_name": "DRR214962_bin.33_metaWRAP_v1.1_MAG",
        "submitter": "Antimicrobial Resistance Research Center, National Institute of Infectious Diseases",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/438/615/GCA_916438615.1_DRR214962_bin.33_metaWRAP_v1.1_MAG",
        "excluded_from_refseq": "derived from metagenome; incomplete metagenome; many frameshifted proteins",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-29",
    "dateModified": "2021-09-29",
    "datePublished": "2021-09-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Actinomyces oris"
        ],
        "sample_taxid": [
            "544580"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not provided"
        ],
        "sample_host_location_id": [],
        "data_size": "0.843 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "3099687",
        "Number of Sequences": "6",
        "Longest Sequences (bp)": "2143205",
        "N50 (bp)": "2143205",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "68.9",
        "Number of CDSs": "3111",
        "Average Protein Length": "272.8",
        "Coding Ratio (%)": "82.1",
        "Number of rRNAs": "6",
        "Number of tRNAs": "49",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Actinomyces oris",
                "strain": "strain=CCUG 34288",
                "accession": "GCA_006546825.1",
                "taxid": 544580,
                "species_taxid": 544580,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 96.1825,
                "matched_fragments": 883,
                "total_fragments": 1030,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Actinomyces oris",
                "strain": "strain=FDAARGOS_1051",
                "accession": "GCA_016127955.1",
                "taxid": 544580,
                "species_taxid": 544580,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 96.1679,
                "matched_fragments": 894,
                "total_fragments": 1030,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Actinomyces naeslundii",
                "strain": "strain=NCTC 10301",
                "accession": "GCA_001956585.1",
                "taxid": 1655,
                "species_taxid": 1655,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.5267,
                "matched_fragments": 817,
                "total_fragments": 1030,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces naeslundii",
                "strain": "strain=Howell 279",
                "accession": "GCA_000285995.1",
                "taxid": 1655,
                "species_taxid": 1655,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.3944,
                "matched_fragments": 737,
                "total_fragments": 1030,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces viscosus",
                "strain": "strain=CCUG 14476",
                "accession": "GCA_004525795.1",
                "taxid": 1656,
                "species_taxid": 1656,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.2396,
                "matched_fragments": 808,
                "total_fragments": 1030,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces viscosus",
                "strain": "strain=NCTC10951",
                "accession": "GCA_900637975.1",
                "taxid": 1656,
                "species_taxid": 1656,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.1782,
                "matched_fragments": 828,
                "total_fragments": 1030,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces johnsonii",
                "strain": "strain=CCUG 34287",
                "accession": "GCA_006546835.1",
                "taxid": 544581,
                "species_taxid": 544581,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.2901,
                "matched_fragments": 789,
                "total_fragments": 1030,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces marmotae",
                "strain": "strain=zg-325",
                "accession": "GCA_009829655.1",
                "taxid": 2737173,
                "species_taxid": 2737173,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.6974,
                "matched_fragments": 401,
                "total_fragments": 1030,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Actinomyces denticolens",
                "strain": "strain=DSM 20671",
                "accession": "GCA_002072185.1",
                "taxid": 52767,
                "species_taxid": 52767,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4884,
                "matched_fragments": 466,
                "total_fragments": 1030,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Georgenia yuyongxinii",
                "strain": "strain=Z443",
                "accession": "GCA_006352065.1",
                "taxid": 2589797,
                "species_taxid": 2589797,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.1743,
                "matched_fragments": 255,
                "total_fragments": 1030,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Ornithinimicrobium kibberense",
                "strain": "strain=DSM 17687",
                "accession": "GCA_006519705.1",
                "taxid": 282060,
                "species_taxid": 282060,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8751,
                "matched_fragments": 191,
                "total_fragments": 1030,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Quadrisphaera setariae",
                "strain": "strain=DD2A",
                "accession": "GCA_008041935.1",
                "taxid": 2593304,
                "species_taxid": 2593304,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7943,
                "matched_fragments": 219,
                "total_fragments": 1030,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_006546825.1",
                "gtdb_species": "s__Actinomyces oris",
                "ani": 96.1676,
                "matched_fragments": 884,
                "total_fragments": 1030,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.45",
                "min_intra_species_ani": "95.25",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 16,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001553935.1",
                "gtdb_species": "s__Actinomyces oris_A",
                "ani": 94.8443,
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                "total_fragments": 1030,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.65",
                "min_intra_species_ani": "97.48",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001937445.1",
                "gtdb_species": "s__Actinomyces oris_C",
                "ani": 93.2655,
                "matched_fragments": 827,
                "total_fragments": 1030,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.06",
                "min_intra_species_ani": "96.78",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 9,
                "status": "-"
            },
            {
                "accession": "GCF_001929375.1",
                "gtdb_species": "s__Actinomyces oris_B",
                "ani": 93.0693,
                "matched_fragments": 806,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.22",
                "min_intra_species_ani": "97.84",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001937665.1",
                "gtdb_species": "s__Actinomyces oris_D",
                "ani": 92.1604,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_005696555.1",
                "gtdb_species": "s__Actinomyces oris_E",
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.15",
                "min_intra_species_ani": "98.35",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
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            },
            {
                "accession": "GCF_900637975.1",
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                "ani": 89.1742,
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                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Actinomyces",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.165,
        "cell_length": 0.258,
        "doubling_h": null,
        "growth_tmp": 37.0,
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        "gc_content": 68.5,
        "coding_genes": 2355.0,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 50.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
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        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Actinomycetaceae",
        "g__Actinomyces",
        "s__Actinomyces oris"
    ],
    "_genome_taxon": [
        "Actinomyces",
        "oris",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Actinomycetaceae",
        "g__Actinomyces",
        "s__Actinomyces oris",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Actinomycetaceae",
        "Actinomyces",
        "Actinomyces",
        "oris"
    ],
    "_meo": [
        {
            "id": "MEO_0000617",
            "label": "saliva"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}