{
    "type": "genome",
    "identifier": "GCA_916438775.1",
    "organism": "uncultured Oribacterium sp.",
    "title": "uncultured Oribacterium sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Antimicrobial Resistance Research Center, National Institute of Infectious Diseases",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_916438775.1",
        "bioproject": "PRJDB9452",
        "biosample": "SAMEA10110154",
        "wgs_master": "CAKAGX000000000.1",
        "refseq_category": "na",
        "taxid": "462198",
        "species_taxid": "462198",
        "organism_name": "uncultured Oribacterium sp.",
        "infraspecific_name": "",
        "isolate": "DRR214959_bin.10_metaWRAP_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/29",
        "asm_name": "DRR214959_bin.10_metaWRAP_v1.1_MAG",
        "submitter": "Antimicrobial Resistance Research Center, National Institute of Infectious Diseases",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/438/775/GCA_916438775.1_DRR214959_bin.10_metaWRAP_v1.1_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-29",
    "dateModified": "2021-09-29",
    "datePublished": "2021-09-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Oribacterium sp."
        ],
        "sample_taxid": [
            "462198"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not provided"
        ],
        "sample_host_location_id": [],
        "data_size": "0.498 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 47.92,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1757353",
        "Number of Sequences": "16",
        "Longest Sequences (bp)": "613791",
        "N50 (bp)": "356592",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "42.3",
        "Number of CDSs": "2144",
        "Average Protein Length": "221.7",
        "Coding Ratio (%)": "81.1",
        "Number of rRNAs": "5",
        "Number of tRNAs": "25",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Oribacterium parvum",
                "strain": "strain=ACB1",
                "accession": "GCA_000238055.2",
                "taxid": 1501329,
                "species_taxid": 1501329,
                "relation_to_type": "type",
                "validated": true,
                "ani": 94.144,
                "matched_fragments": 387,
                "total_fragments": 578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oribacterium asaccharolyticum",
                "strain": "strain=ACB7",
                "accession": "GCA_000238075.1",
                "taxid": 1501332,
                "species_taxid": 1501332,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.5784,
                "matched_fragments": 260,
                "total_fragments": 578,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oribacterium sinus",
                "strain": "strain=DSM 17245",
                "accession": "GCA_014202695.1",
                "taxid": 237576,
                "species_taxid": 237576,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.0709,
                "matched_fragments": 181,
                "total_fragments": 578,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 47.92,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000238055.2",
                "gtdb_species": "s__Oribacterium parvum",
                "ani": 94.144,
                "matched_fragments": 387,
                "total_fragments": 578,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.88",
                "min_intra_species_ani": "98.13",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.97",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_000238075.1",
                "gtdb_species": "s__Oribacterium asaccharolyticum",
                "ani": 86.6137,
                "matched_fragments": 259,
                "total_fragments": 578,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.30",
                "min_intra_species_ani": "96.30",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014202695.1",
                "gtdb_species": "s__Oribacterium sinus",
                "ani": 83.0719,
                "matched_fragments": 181,
                "total_fragments": 578,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.41",
                "min_intra_species_ani": "95.16",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCA_015258095.1",
                "gtdb_species": "s__Oribacterium sp015258095",
                "ani": 80.0097,
                "matched_fragments": 141,
                "total_fragments": 578,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oribacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": null,
        "genome_size": 2629409.0,
        "gc_content": 43.0,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Oribacterium",
        "s__Oribacterium sp916438775"
    ],
    "_genome_taxon": [
        "uncultured",
        "Oribacterium",
        "sp.",
        "d__Bacteria",
        "p__Bacillota_A",
        "c__Clostridia",
        "o__Lachnospirales",
        "f__Lachnospiraceae",
        "g__Oribacterium",
        "s__Oribacterium sp916438775",
        "Bacteria",
        "Bacillota",
        "A",
        "Clostridia",
        "Lachnospirales",
        "Lachnospiraceae",
        "Oribacterium",
        "Oribacterium",
        "sp916438775"
    ],
    "_meo": [
        {
            "id": "MEO_0000617",
            "label": "saliva"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}