{
    "type": "genome",
    "identifier": "GCA_916439055.1",
    "organism": "uncultured Actinomyces sp.",
    "title": "uncultured Actinomyces sp.",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "Antimicrobial Resistance Research Center, National Institute of Infectious Diseases",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_916439055.1",
        "bioproject": "PRJDB9452",
        "biosample": "SAMEA10110226",
        "wgs_master": "CAKAGP000000000.1",
        "refseq_category": "na",
        "taxid": "249061",
        "species_taxid": "249061",
        "organism_name": "uncultured Actinomyces sp.",
        "infraspecific_name": "",
        "isolate": "DRR214961_bin.30_metaWRAP_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/29",
        "asm_name": "DRR214961_bin.30_metaWRAP_v1.1_MAG",
        "submitter": "Antimicrobial Resistance Research Center, National Institute of Infectious Diseases",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/439/055/GCA_916439055.1_DRR214961_bin.30_metaWRAP_v1.1_MAG",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-29",
    "dateModified": "2021-09-29",
    "datePublished": "2021-09-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Actinomyces sp."
        ],
        "sample_taxid": [
            "249061"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not provided"
        ],
        "sample_host_location_id": [],
        "data_size": "0.253 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 37.5,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "883716",
        "Number of Sequences": "5",
        "Longest Sequences (bp)": "525404",
        "N50 (bp)": "525404",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "56.1",
        "Number of CDSs": "1047",
        "Average Protein Length": "243.6",
        "Coding Ratio (%)": "86.6",
        "Number of rRNAs": "4",
        "Number of tRNAs": "22",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Schaalia hyovaginalis",
                "strain": "strain=DSM 10695",
                "accession": "GCA_014208035.1",
                "taxid": 29316,
                "species_taxid": 29316,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4238,
                "matched_fragments": 50,
                "total_fragments": 293,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 37.5,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000758755.1",
                "gtdb_species": "s__Pauljensenia sp000758755",
                "ani": 97.3944,
                "matched_fragments": 281,
                "total_fragments": 293,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.30",
                "min_intra_species_ani": "97.11",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900155605.1",
                "gtdb_species": "s__Pauljensenia marseillensis",
                "ani": 94.6481,
                "matched_fragments": 284,
                "total_fragments": 293,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.98",
                "min_intra_species_ani": "99.98",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900554605.1",
                "gtdb_species": "s__Pauljensenia sp900554605",
                "ani": 93.004,
                "matched_fragments": 169,
                "total_fragments": 293,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000308055.1",
                "gtdb_species": "s__Pauljensenia sp000308055",
                "ani": 83.4043,
                "matched_fragments": 171,
                "total_fragments": 293,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.51",
                "min_intra_species_ani": "95.51",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.95",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_001070855.1",
                "gtdb_species": "s__Pauljensenia pyogenes_A",
                "ani": 83.112,
                "matched_fragments": 163,
                "total_fragments": 293,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.06",
                "min_intra_species_ani": "97.06",
                "mean_intra_species_af": "0.98",
                "min_intra_species_af": "0.98",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900541895.1",
                "gtdb_species": "s__Pauljensenia sp900541895",
                "ani": 82.5248,
                "matched_fragments": 164,
                "total_fragments": 293,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.30",
                "min_intra_species_ani": "95.78",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_000411415.1",
                "gtdb_species": "s__Pauljensenia sp000411415",
                "ani": 78.5566,
                "matched_fragments": 58,
                "total_fragments": 293,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.95",
                "min_intra_species_ani": "97.15",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_000278725.1",
                "gtdb_species": "s__Pauljensenia sp000278725",
                "ani": 77.8117,
                "matched_fragments": 55,
                "total_fragments": 293,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Actinomycetaceae;g__Pauljensenia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.30",
                "min_intra_species_ani": "95.28",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.165,
        "cell_length": 0.258,
        "doubling_h": null,
        "growth_tmp": 36.951,
        "optimum_tmp": 36.833,
        "optimum_ph": 7.0,
        "genome_size": 2699137.843,
        "gc_content": 65.627,
        "coding_genes": 2308.7,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 49.8,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.2,
        "anaerobic_respiration": 0.428,
        "aerobic_respiration": 0.371,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.95,
        "coccus_cell_shape": 0.05,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Actinomycetaceae",
        "g__Pauljensenia",
        "s__Pauljensenia sp000758755"
    ],
    "_genome_taxon": [
        "uncultured",
        "Actinomyces",
        "sp.",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Actinomycetaceae",
        "g__Pauljensenia",
        "s__Pauljensenia sp000758755",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Actinomycetaceae",
        "Pauljensenia",
        "Pauljensenia",
        "sp000758755"
    ],
    "_meo": [
        {
            "id": "MEO_0000617",
            "label": "saliva"
        }
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}