{
    "type": "genome",
    "identifier": "GCA_916444665.1",
    "organism": "Prevotella pallens",
    "title": "Prevotella pallens",
    "description": "derived from metagenome; incomplete metagenome; many frameshifted proteins",
    "data type": "Genome sequencing and assembly",
    "organization": "Antimicrobial Resistance Research Center, National Institute of Infectious Diseases",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_916444665.1",
        "bioproject": "PRJDB9452",
        "biosample": "SAMEA10110241",
        "wgs_master": "CAKAIP000000000.1",
        "refseq_category": "na",
        "taxid": "60133",
        "species_taxid": "60133",
        "organism_name": "Prevotella pallens",
        "infraspecific_name": "",
        "isolate": "DRR214962_bin.35_metaWRAP_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2021/09/29",
        "asm_name": "DRR214962_bin.35_metaWRAP_v1.1_MAG",
        "submitter": "Antimicrobial Resistance Research Center, National Institute of Infectious Diseases",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/916/444/665/GCA_916444665.1_DRR214962_bin.35_metaWRAP_v1.1_MAG",
        "excluded_from_refseq": "derived from metagenome; incomplete metagenome; many frameshifted proteins",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2021-09-29",
    "dateModified": "2021-09-29",
    "datePublished": "2021-09-29",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Prevotella pallens"
        ],
        "sample_taxid": [
            "60133"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not provided"
        ],
        "sample_host_location_id": [],
        "data_size": "0.647 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 83.33,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "2302409",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2302409",
        "N50 (bp)": "2302409",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "36.8",
        "Number of CDSs": "2406",
        "Average Protein Length": "254.4",
        "Coding Ratio (%)": "79.8",
        "Number of rRNAs": "9",
        "Number of tRNAs": "39",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Prevotella pallens",
                "strain": "strain=ATCC 700821",
                "accession": "GCA_000220255.1",
                "taxid": 60133,
                "species_taxid": 60133,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.0915,
                "matched_fragments": 681,
                "total_fragments": 767,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Prevotella pallens",
                "strain": "strain=DSM 18710",
                "accession": "GCA_003269195.1",
                "taxid": 60133,
                "species_taxid": 60133,
                "relation_to_type": "type",
                "validated": true,
                "ani": 98.0716,
                "matched_fragments": 667,
                "total_fragments": 767,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Prevotella aurantiaca",
                "strain": "strain=JCM 15754",
                "accession": "GCA_000614025.1",
                "taxid": 596085,
                "species_taxid": 596085,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3661,
                "matched_fragments": 428,
                "total_fragments": 767,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella intermedia",
                "strain": "strain=DSM 20706",
                "accession": "GCA_000439065.1",
                "taxid": 28131,
                "species_taxid": 28131,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.8058,
                "matched_fragments": 382,
                "total_fragments": 767,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella intermedia",
                "strain": "strain=ATCC 25611",
                "accession": "GCA_000519165.1",
                "taxid": 28131,
                "species_taxid": 28131,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.7363,
                "matched_fragments": 375,
                "total_fragments": 767,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella vespertina",
                "strain": "strain=A2879",
                "accession": "GCA_009728485.1",
                "taxid": 2608404,
                "species_taxid": 2608404,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.3013,
                "matched_fragments": 87,
                "total_fragments": 767,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella veroralis",
                "strain": "strain=DSM 19559",
                "accession": "GCA_000377625.1",
                "taxid": 28137,
                "species_taxid": 28137,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.5792,
                "matched_fragments": 94,
                "total_fragments": 767,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Prevotella veroralis",
                "strain": "strain=JCM 6290",
                "accession": "GCA_000613325.1",
                "taxid": 28137,
                "species_taxid": 28137,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.2912,
                "matched_fragments": 94,
                "total_fragments": 767,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 83.33,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000220255.1",
                "gtdb_species": "s__Prevotella pallens",
                "ani": 98.0915,
                "matched_fragments": 681,
                "total_fragments": 767,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "96.89",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 40,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000220235.1",
                "gtdb_species": "s__Prevotella nigrescens",
                "ani": 83.8855,
                "matched_fragments": 502,
                "total_fragments": 767,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.14",
                "min_intra_species_ani": "97.70",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.78",
                "num_clustered_genomes": 13,
                "status": "-"
            },
            {
                "accession": "GCF_000614025.1",
                "gtdb_species": "s__Prevotella aurantiaca",
                "ani": 82.3788,
                "matched_fragments": 427,
                "total_fragments": 767,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.47",
                "min_intra_species_ani": "98.39",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_001953955.1",
                "gtdb_species": "s__Prevotella intermedia",
                "ani": 80.8323,
                "matched_fragments": 392,
                "total_fragments": 767,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.61",
                "min_intra_species_ani": "96.13",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 34,
                "status": "-"
            },
            {
                "accession": "GCF_000257925.1",
                "gtdb_species": "s__Prevotella sp000257925",
                "ani": 80.7176,
                "matched_fragments": 96,
                "total_fragments": 767,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.40",
                "min_intra_species_ani": "96.99",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_000377625.1",
                "gtdb_species": "s__Prevotella veroralis",
                "ani": 79.5792,
                "matched_fragments": 94,
                "total_fragments": 767,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.76",
                "min_intra_species_ani": "96.65",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_900155655.1",
                "gtdb_species": "s__Prevotella ihumii",
                "ani": 79.1033,
                "matched_fragments": 173,
                "total_fragments": 767,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000262545.1",
                "gtdb_species": "s__Prevotella bivia",
                "ani": 78.4525,
                "matched_fragments": 103,
                "total_fragments": 767,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Bacteroidaceae;g__Prevotella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.82",
                "min_intra_species_ani": "98.45",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 8,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.302,
        "cell_length": 0.079,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 34.75,
        "optimum_ph": 7.109,
        "genome_size": 3050545.5,
        "gc_content": 37.46,
        "coding_genes": 2508.172,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 50.875,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Prevotella",
        "s__Prevotella pallens"
    ],
    "_genome_taxon": [
        "Prevotella",
        "pallens",
        "d__Bacteria",
        "p__Bacteroidota",
        "c__Bacteroidia",
        "o__Bacteroidales",
        "f__Bacteroidaceae",
        "g__Prevotella",
        "s__Prevotella pallens",
        "Bacteria",
        "Bacteroidota",
        "Bacteroidia",
        "Bacteroidales",
        "Bacteroidaceae",
        "Prevotella",
        "Prevotella",
        "pallens"
    ],
    "_meo": [
        {
            "id": "MEO_0000617",
            "label": "saliva"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}