{ "type": "genome", "identifier": "GCA_927353745.1", "organism": "uncultured Collinsella sp.", "title": "uncultured Collinsella sp.", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_927353745.1", "bioproject": "PRJEB41355", "biosample": "SAMEA12233742", "wgs_master": "CAKMIB000000000.1", "refseq_category": "na", "taxid": "165190", "species_taxid": "165190", "organism_name": "uncultured Collinsella sp.", "infraspecific_name": "", "isolate": "SRR789046_bin.10_metaWRAP_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/01/21", "asm_name": "SRR789046_bin.10_metaWRAP_v1.1_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/927/353/745/GCA_927353745.1_SRR789046_bin.10_metaWRAP_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-01-21", "dateModified": "2022-01-21", "datePublished": "2022-01-21", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Collinsella sp." ], "sample_taxid": [ "165190" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "United Kingdom" ], "sample_host_location_id": [], "data_size": "0.688 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 85.97, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "2410086", "Number of Sequences": "220", "Longest Sequences (bp)": "52180", "N50 (bp)": "16121", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.5", "Number of CDSs": "1993", "Average Protein Length": "308.3", "Coding Ratio (%)": "76.5", "Number of rRNAs": "0", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enorma massiliensis", "strain": "", "accession": "GCA_000311845.1", "taxid": 1472761, "species_taxid": 1472761, "relation_to_type": "type", "validated": true, "ani": 97.0946, "matched_fragments": 555, "total_fragments": 691, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Enorma shizhengliae", "strain": "strain=HF-1365", "accession": "GCA_009676995.1", "taxid": 2606615, "species_taxid": 2606615, "relation_to_type": "type", "validated": true, "ani": 95.5187, "matched_fragments": 553, "total_fragments": 691, "ani_threshold": 95, "status": "inconclusive" }, { "organism_name": "Enorma timonensis", "strain": "strain=GD5", "accession": "GCA_000321165.1", "taxid": 1232436, "species_taxid": 1232436, "relation_to_type": "type", "validated": true, "ani": 81.4028, "matched_fragments": 328, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma burkinafasonensis", "strain": "strain=Marseille-P9525", "accession": "GCA_902150035.1", "taxid": 2590867, "species_taxid": 2590867, "relation_to_type": "type", "validated": true, "ani": 81.3147, "matched_fragments": 340, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enorma phocaeensis", "strain": "strain=Marseille-P3242", "accession": "GCA_900186505.1", "taxid": 1871019, "species_taxid": 1871019, "relation_to_type": "type", "validated": true, "ani": 80.9904, "matched_fragments": 314, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella stercoris", "strain": "strain=DSM 13279", "accession": "GCA_000156215.1", "taxid": 147206, "species_taxid": 147206, "relation_to_type": "type", "validated": true, "ani": 78.9501, "matched_fragments": 221, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella phocaeensis", "strain": "strain=Marseille-P3245", "accession": "GCA_900119895.1", "taxid": 1871016, "species_taxid": 1871016, "relation_to_type": "type", "validated": true, "ani": 78.9249, "matched_fragments": 210, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Collinsella stercoris", "strain": "strain=DSM 13279", "accession": "GCA_025149625.1", "taxid": 147206, "species_taxid": 147206, "relation_to_type": "type", "validated": true, "ani": 78.9094, "matched_fragments": 223, "total_fragments": 691, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermophilibacter mediterraneus", 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