{
    "type": "genome",
    "identifier": "GCA_927911075.1",
    "organism": "Rothia dentocariosa",
    "title": "Rothia dentocariosa",
    "description": "derived from metagenome; genome length too small",
    "data type": "Genome sequencing and assembly",
    "organization": "EMG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_927911075.1",
        "bioproject": "PRJEB49987",
        "biosample": "SAMEA12514444",
        "wgs_master": "CAKMOT000000000.1",
        "refseq_category": "na",
        "taxid": "2047",
        "species_taxid": "2047",
        "organism_name": "Rothia dentocariosa",
        "infraspecific_name": "",
        "isolate": "ERR3827215_bin.4_metaWRAP_v1.1_MAG",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/01/25",
        "asm_name": "ERR3827215_bin.4_metaWRAP_v1.1_MAG",
        "submitter": "EMG",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/927/911/075/GCA_927911075.1_ERR3827215_bin.4_metaWRAP_v1.1_MAG",
        "excluded_from_refseq": "derived from metagenome; genome length too small",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-01-25",
    "dateModified": "2022-01-25",
    "datePublished": "2022-01-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Rothia dentocariosa"
        ],
        "sample_taxid": [
            "2047"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "not provided"
        ],
        "sample_host_location_id": [],
        "data_size": "0.454 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 78.32,
        "contamination": 1.04,
        "strain_heterogeneity": 100.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1567736",
        "Number of Sequences": "259",
        "Longest Sequences (bp)": "27785",
        "N50 (bp)": "6791",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.1",
        "Number of CDSs": "1532",
        "Average Protein Length": "247.0",
        "Coding Ratio (%)": "72.4",
        "Number of rRNAs": "1",
        "Number of tRNAs": "33",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Rothia dentocariosa",
                "strain": "strain=NCTC10917",
                "accession": "GCA_900455895.1",
                "taxid": 2047,
                "species_taxid": 2047,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.9341,
                "matched_fragments": 371,
                "total_fragments": 384,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rothia dentocariosa",
                "strain": "strain=ATCC 17931",
                "accession": "GCA_000164695.2",
                "taxid": 2047,
                "species_taxid": 2047,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.9125,
                "matched_fragments": 376,
                "total_fragments": 384,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Rothia aeria",
                "strain": "strain=FDAARGOS_1137",
                "accession": "GCA_016726365.1",
                "taxid": 172042,
                "species_taxid": 172042,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4162,
                "matched_fragments": 192,
                "total_fragments": 384,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rothia mucilaginosa",
                "strain": "strain=ATCC 25296",
                "accession": "GCA_000175615.1",
                "taxid": 43675,
                "species_taxid": 43675,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 78.9852,
                "matched_fragments": 107,
                "total_fragments": 384,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 78.32,
            "contamination": 1.04,
            "strain_heterogeneity": 100.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_000164695.2",
                "gtdb_species": "s__Rothia dentocariosa",
                "ani": 96.9125,
                "matched_fragments": 376,
                "total_fragments": 384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.76",
                "min_intra_species_ani": "96.24",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 27,
                "status": "conclusive"
            },
            {
                "accession": "GCA_002355935.1",
                "gtdb_species": "s__Rothia aeria",
                "ani": 85.3813,
                "matched_fragments": 189,
                "total_fragments": 384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.65",
                "min_intra_species_ani": "97.24",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_001061665.1",
                "gtdb_species": "s__Rothia mucilaginosa_A",
                "ani": 79.1726,
                "matched_fragments": 103,
                "total_fragments": 384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.28",
                "min_intra_species_ani": "96.59",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 10,
                "status": "-"
            },
            {
                "accession": "GCF_000175615.1",
                "gtdb_species": "s__Rothia mucilaginosa",
                "ani": 79.0286,
                "matched_fragments": 106,
                "total_fragments": 384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.99",
                "min_intra_species_ani": "95.33",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 44,
                "status": "-"
            },
            {
                "accession": "GCF_901875305.1",
                "gtdb_species": "s__Rothia sp902373285",
                "ani": 78.9691,
                "matched_fragments": 103,
                "total_fragments": 384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.53",
                "min_intra_species_ani": "97.34",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 6,
                "status": "-"
            },
            {
                "accession": "GCF_001548235.1",
                "gtdb_species": "s__Rothia mucilaginosa_B",
                "ani": 78.7238,
                "matched_fragments": 107,
                "total_fragments": 384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.72",
                "min_intra_species_ani": "95.51",
                "mean_intra_species_af": "0.97",
                "min_intra_species_af": "0.96",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001808955.1",
                "gtdb_species": "s__Rothia sp001808955",
                "ani": 78.5503,
                "matched_fragments": 109,
                "total_fragments": 384,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Actinomycetales;f__Micrococcaceae;g__Rothia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.04",
                "min_intra_species_ani": "95.53",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 20,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.0,
        "cell_length": 0.0,
        "doubling_h": null,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 6.75,
        "genome_size": 2520558.083,
        "gc_content": 53.697,
        "coding_genes": 2110.333,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 49.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_gtdb_taxon": [
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Micrococcaceae",
        "g__Rothia",
        "s__Rothia dentocariosa"
    ],
    "_genome_taxon": [
        "Rothia",
        "dentocariosa",
        "d__Bacteria",
        "p__Actinomycetota",
        "c__Actinomycetes",
        "o__Actinomycetales",
        "f__Micrococcaceae",
        "g__Rothia",
        "s__Rothia dentocariosa",
        "Bacteria",
        "Actinomycetota",
        "Actinomycetes",
        "Actinomycetales",
        "Micrococcaceae",
        "Rothia",
        "Rothia",
        "dentocariosa"
    ],
    "_meo": [
        {
            "id": "MEO_0000467",
            "label": "oral cavity"
        }
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}