{ "type": "genome", "identifier": "GCA_930990205.1", "organism": "uncultured Eubacteriaceae bacterium", "title": "uncultured Eubacteriaceae bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "EMG", "publication": [ {} ], "properties": { "assembly_accession": "GCA_930990205.1", "bioproject": "PRJEB50262", "biosample": "SAMEA13008937", "wgs_master": "CAKNOR000000000.1", "refseq_category": "na", "taxid": "203524", "species_taxid": "203524", "organism_name": "uncultured Eubacteriaceae bacterium", "infraspecific_name": "", "isolate": "ERR3414573_bin.76_metaWRAP_v1.1_MAG", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/02/27", "asm_name": "ERR3414573_bin.76_metaWRAP_v1.1_MAG", "submitter": "EMG", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/930/990/205/GCA_930990205.1_ERR3414573_bin.76_metaWRAP_v1.1_MAG", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-02-27", "dateModified": "2022-02-27", "datePublished": "2022-02-27", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Eubacteriaceae bacterium" ], "sample_taxid": [ "203524" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not provided" ], "sample_host_location_id": [], "data_size": "0.895 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "3156938", "Number of Sequences": "94", "Longest Sequences (bp)": "118596", "N50 (bp)": "43041", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "52.3", "Number of CDSs": "2839", "Average Protein Length": "323.9", "Coding Ratio (%)": "87.4", "Number of rRNAs": "0", "Number of tRNAs": "27", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Massilistercora timonensis", "strain": "strain=Marseille-P3756", "accession": "GCA_900312975.1", "taxid": 2086584, "species_taxid": 2086584, "relation_to_type": "type", "validated": true, "ani": 77.1938, "matched_fragments": 115, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia marasmi", "strain": "strain=Marseille-P2377", "accession": "GCA_900258535.1", "taxid": 1917868, "species_taxid": 1917868, "relation_to_type": "suspected-type", "validated": true, "ani": 76.7687, "matched_fragments": 116, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=ATCC 27340", "accession": "GCA_000373885.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 76.7205, "matched_fragments": 119, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schaedlerella arabinosiphila", "strain": "strain=DSM 106076", "accession": "GCA_003885045.1", "taxid": 2044587, "species_taxid": 2044587, "relation_to_type": "type", "validated": true, "ani": 76.6762, "matched_fragments": 103, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=DSM 2950", "accession": "GCA_000439125.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6729, "matched_fragments": 123, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=DSM 2950", "accession": "GCA_014131715.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6595, "matched_fragments": 125, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster asparagiformis", "strain": "strain=DSM 15981", "accession": "GCA_025149125.1", "taxid": 333367, "species_taxid": 333367, "relation_to_type": "type", "validated": true, "ani": 76.6569, "matched_fragments": 111, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia producta", "strain": "strain=JCM 1471", "accession": "GCA_010669205.1", "taxid": 33035, "species_taxid": 33035, "relation_to_type": "suspected-type", "validated": true, "ani": 76.6518, "matched_fragments": 123, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster asparagiformis", "strain": "strain=DSM 15981", "accession": "GCA_000158075.1", "taxid": 333367, "species_taxid": 333367, "relation_to_type": "type", "validated": true, "ani": 76.6238, "matched_fragments": 112, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia coccoides", "strain": "strain=DSM 935", "accession": "GCA_004340925.1", "taxid": 1532, "species_taxid": 1532, "relation_to_type": "type", "validated": true, "ani": 76.5994, "matched_fragments": 123, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Diplocloster agilis", "strain": "strain=ASD5720", "accession": "GCA_019042275.1", "taxid": 2850323, "species_taxid": 2850323, "relation_to_type": "type", "validated": true, "ani": 76.5808, "matched_fragments": 80, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia pseudococcoides", "strain": "strain=YL58", "accession": "GCA_001689125.2", "taxid": 1796616, "species_taxid": 1796616, "relation_to_type": "type", "validated": true, "ani": 76.4182, "matched_fragments": 116, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Blautia pseudococcoides", "strain": "strain=YL58", "accession": "GCA_002221555.2", "taxid": 1796616, "species_taxid": 1796616, "relation_to_type": "type", "validated": true, "ani": 76.3822, "matched_fragments": 117, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella effluvii", "strain": "strain=DSM 24995", "accession": "GCA_003201875.1", "taxid": 1096246, "species_taxid": 1096246, "relation_to_type": "type", "validated": true, "ani": 76.2258, "matched_fragments": 63, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lactonifactor longoviformis", "strain": "strain=DSM 17459", "accession": "GCA_900129135.1", "taxid": 341220, "species_taxid": 341220, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1694, "matched_fragments": 83, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_000160095.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 76.1341, "matched_fragments": 63, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_009831375.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0917, "matched_fragments": 51, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_002959615.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0763, "matched_fragments": 53, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_000169475.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 76.0708, "matched_fragments": 53, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=ATCC 29149", "accession": "GCA_025152275.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "type", "validated": true, "ani": 76.0695, "matched_fragments": 52, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Ruminococcus] gnavus", "strain": "strain=JCM6515", "accession": "GCA_008121495.1", "taxid": 33038, "species_taxid": 33038, "relation_to_type": "suspected-type", "validated": true, "ani": 76.065, "matched_fragments": 52, "total_fragments": 1007, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_018713585.1", "gtdb_species": "s__Pullilachnospira stercoravium", "ani": 97.9377, "matched_fragments": 726, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pullilachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.91", "min_intra_species_ani": "97.84", "mean_intra_species_af": "0.85", "min_intra_species_af": "0.79", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCA_018711275.1", "gtdb_species": "s__Pullilachnospira intestinigallinarum", "ani": 87.6819, "matched_fragments": 703, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Pullilachnospira", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.92", "min_intra_species_ani": "99.92", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.90", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_018711815.1", "gtdb_species": "s__Egerieimonas intestinavium", "ani": 77.6249, "matched_fragments": 209, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Egerieimonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004123145.1", "gtdb_species": "s__Oliverpabstia faecicola", "ani": 77.456, "matched_fragments": 172, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oliverpabstia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.72", "min_intra_species_ani": "97.58", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.80", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_000432335.1", "gtdb_species": "s__Oliverpabstia sp000432335", "ani": 77.4383, "matched_fragments": 182, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oliverpabstia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.29", "min_intra_species_ani": "99.14", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.81", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_018374355.1", "gtdb_species": "s__Oliverpabstia sp018374355", "ani": 77.4188, "matched_fragments": 232, "total_fragments": 1007, "gtdb_taxonomy": 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"d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Oliverpabstia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.25", "min_intra_species_ani": "96.88", "mean_intra_species_af": "0.81", "min_intra_species_af": "0.78", "num_clustered_genomes": 19, "status": "-" }, { "accession": "GCA_017887445.1", "gtdb_species": "s__Fusicatenibacter sp017887445", "ani": 77.27, "matched_fragments": 174, "total_fragments": 1007, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Fusicatenibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_018716305.1", "gtdb_species": "s__Scatomonas merdigallinarum", "ani": 77.2457, "matched_fragments": 169, "total_fragments": 1007, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Pullilachnospira", "s__Pullilachnospira stercoravium" ], "_genome_taxon": [ "uncultured", "Eubacteriaceae", "bacterium", "d__Bacteria", "p__Bacillota_A", "c__Clostridia", "o__Lachnospirales", "f__Lachnospiraceae", "g__Pullilachnospira", "s__Pullilachnospira stercoravium", "Bacteria", "Bacillota", "A", "Clostridia", "Lachnospirales", "Lachnospiraceae", "Pullilachnospira", "Pullilachnospira", "stercoravium" ], "_meo": [ { "id": "MEO_0000460", "label": "cecum" } ], "quality": 3, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }