{
    "type": "genome",
    "identifier": "GCA_934086205.1",
    "organism": "uncultured Methanomassiliicoccales archaeon",
    "title": "uncultured Methanomassiliicoccales archaeon",
    "description": "derived from environmental source; derived from metagenome",
    "data type": "Genome sequencing and assembly",
    "organization": "stanford university school of medicine",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCA_934086205.1",
        "bioproject": "PRJEB49206",
        "biosample": "SAMEA13473023",
        "wgs_master": "CAKOHX000000000.1",
        "refseq_category": "na",
        "taxid": "1235852",
        "species_taxid": "1235852",
        "organism_name": "uncultured Methanomassiliicoccales archaeon",
        "infraspecific_name": "",
        "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Nepal_MoBio_Fiber-Hadza-Nepal_F_1_RAJ0018YZ.53",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2022/04/15",
        "asm_name": "ERR7739005_bin.53",
        "submitter": "stanford university school of medicine",
        "gbrs_paired_asm": "na",
        "paired_asm_comp": "na",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/086/205/GCA_934086205.1_ERR7739005_bin.53",
        "excluded_from_refseq": "derived from environmental source; derived from metagenome",
        "relation_to_type_material": "",
        "asm_not_live_date": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2022-04-15",
    "dateModified": "2022-04-15",
    "datePublished": "2022-04-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "uncultured Methanomassiliicoccales archaeon"
        ],
        "sample_taxid": [
            "1235852"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Nepal"
        ],
        "sample_host_location_id": [],
        "data_size": "0.532 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 91.67,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "MAG",
    "data_source": "INSDC",
    "_dfast": {
        "Total Sequence Length (bp)": "1890176",
        "Number of Sequences": "11",
        "Longest Sequences (bp)": "485953",
        "N50 (bp)": "339884",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.4",
        "Number of CDSs": "1854",
        "Average Protein Length": "308.2",
        "Coding Ratio (%)": "90.7",
        "Number of rRNAs": "5",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [],
        "cc_result": {
            "completeness": 91.67,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_905187815.1",
                "gtdb_species": "s__UBA71 sp905187815",
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                "matched_fragments": 508,
                "total_fragments": 624,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCA_009911715.1",
                "gtdb_species": "s__UBA71 sp006954425",
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                "matched_fragments": 437,
                "total_fragments": 624,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.86",
                "min_intra_species_ani": "96.86",
                "mean_intra_species_af": "0.82",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_002504405.1",
                "gtdb_species": "s__UBA71 sp002504405",
                "ani": 81.8513,
                "matched_fragments": 324,
                "total_fragments": 624,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_017461225.1",
                "gtdb_species": "s__UBA71 sp017461225",
                "ani": 80.9505,
                "matched_fragments": 267,
                "total_fragments": 624,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016296195.1",
                "gtdb_species": "s__UBA71 sp016296195",
                "ani": 80.6179,
                "matched_fragments": 192,
                "total_fragments": 624,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_015063135.1",
                "gtdb_species": "s__UBA71 sp015063135",
                "ani": 80.3392,
                "matched_fragments": 242,
                "total_fragments": 624,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.46",
                "min_intra_species_ani": "98.46",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_001563305.1",
                "gtdb_species": "s__UBA71 sp001563305",
                "ani": 79.3349,
                "matched_fragments": 200,
                "total_fragments": 624,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_016284295.1",
                "gtdb_species": "s__UBA71 sp016284295",
                "ani": 79.1679,
                "matched_fragments": 205,
                "total_fragments": 624,
                "gtdb_taxonomy": "d__Archaea;p__Thermoplasmatota;c__Thermoplasmata;o__Methanomassiliicoccales;f__Methanomethylophilaceae;g__UBA71",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": 1577732.75,
        "gc_content": 52.4,
        "coding_genes": 1496.833,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 45.5,
        "gram_stain": null,
        "sporulation": 0.0,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_gtdb_taxon": [
        "d__Archaea",
        "p__Thermoplasmatota",
        "c__Thermoplasmata",
        "o__Methanomassiliicoccales",
        "f__Methanomethylophilaceae",
        "g__UBA71",
        "s__UBA71 sp905187815"
    ],
    "_genome_taxon": [
        "uncultured",
        "Methanomassiliicoccales",
        "archaeon",
        "d__Archaea",
        "p__Thermoplasmatota",
        "c__Thermoplasmata",
        "o__Methanomassiliicoccales",
        "f__Methanomethylophilaceae",
        "g__UBA71",
        "s__UBA71 sp905187815",
        "Archaea",
        "Thermoplasmatota",
        "Thermoplasmata",
        "Methanomassiliicoccales",
        "Methanomethylophilaceae",
        "UBA71",
        "UBA71",
        "sp905187815"
    ],
    "_meo": [
        {
            "id": "MEO_0000054",
            "label": "feces"
        }
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}