{ "type": "genome", "identifier": "GCA_934102335.1", "organism": "uncultured Bacilli bacterium", "title": "uncultured Bacilli bacterium", "description": "derived from environmental source; derived from metagenome", "data type": "Genome sequencing and assembly", "organization": "stanford university school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCA_934102335.1", "bioproject": "PRJEB49206", "biosample": "SAMEA13503259", "wgs_master": "CAKOSP000000000.1", "refseq_category": "na", "taxid": "224209", "species_taxid": "224209", "organism_name": "uncultured Bacilli bacterium", "infraspecific_name": "", "isolate": "REFINED_METABAT215_TOP10_CONTIGS_1500_ASSEMBLY_K77_MERGED__Hadza_MoBio_hadza-A-D_O_6_1198.205", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2022/04/17", "asm_name": "ERR7738594_bin.205", "submitter": "stanford university school of medicine", "gbrs_paired_asm": "na", "paired_asm_comp": "na", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/934/102/335/GCA_934102335.1_ERR7738594_bin.205", "excluded_from_refseq": "derived from environmental source; derived from metagenome", "relation_to_type_material": "", "asm_not_live_date": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2022-04-17", "dateModified": "2022-04-17", "datePublished": "2022-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "uncultured Bacilli bacterium" ], "sample_taxid": [ "224209" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Tanzania" ], "sample_host_location_id": [], "data_size": "0.267 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "MAG", "data_source": "INSDC", "_dfast": { "Total Sequence Length (bp)": "982867", "Number of Sequences": "7", "Longest Sequences (bp)": "334617", "N50 (bp)": "192202", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "26.6", "Number of CDSs": "1019", "Average Protein Length": "298.9", "Coding Ratio (%)": "93.0", "Number of rRNAs": "1", "Number of tRNAs": "34", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCA_000437355.1", "gtdb_species": "s__Onthocola_B sp000437355", "ani": 77.7989, "matched_fragments": 65, "total_fragments": 325, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Onthocola_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "98.06", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.84", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_902797105.1", "gtdb_species": "s__Onthocola_B sp902797105", "ani": 77.2258, "matched_fragments": 54, "total_fragments": 325, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Onthocola_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017435485.1", "gtdb_species": "s__RGIG1752 sp017435485", "ani": 77.218, "matched_fragments": 52, "total_fragments": 325, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__RGIG1752", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017441065.1", "gtdb_species": "s__SIG200 sp017441065", "ani": 77.1297, "matched_fragments": 65, "total_fragments": 325, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__SIG200", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.98", "min_intra_species_ani": "97.98", "mean_intra_species_af": "0.82", "min_intra_species_af": "0.82", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_015059425.1", "gtdb_species": "s__Caccenecus sp015059425", "ani": 77.0437, "matched_fragments": 59, "total_fragments": 325, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Caccenecus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_900551525.1", "gtdb_species": "s__Onthocola_B sp900551525", "ani": 76.9482, "matched_fragments": 55, "total_fragments": 325, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Onthocola_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.24", "min_intra_species_ani": "97.82", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_900546715.1", "gtdb_species": "s__Onthocola_B sp900546715", "ani": 76.9434, "matched_fragments": 69, "total_fragments": 325, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Onthocola_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_900544625.1", "gtdb_species": "s__Onthocola_B sp900544625", "ani": 76.8917, "matched_fragments": 68, "total_fragments": 325, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Onthocola_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.58", "min_intra_species_ani": "97.40", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCA_900549285.1", "gtdb_species": "s__Caccenecus sp900549285", "ani": 76.8495, "matched_fragments": 53, "total_fragments": 325, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__Caccenecus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.98", "min_intra_species_af": "0.96", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_017434825.1", "gtdb_species": "s__UBA6448 sp017434825", "ani": 76.6811, "matched_fragments": 56, "total_fragments": 325, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__RF39;f__UBA660;g__UBA6448", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_gtdb_taxon": [ "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__RF39", "f__UBA660", "g__CAKOSP01", "s__CAKOSP01 sp934102335" ], "_genome_taxon": [ "uncultured", "Bacilli", "bacterium", "d__Bacteria", "p__Bacillota_I", "c__Bacilli_A", "o__RF39", "f__UBA660", "g__CAKOSP01", "s__CAKOSP01 sp934102335", "Bacteria", "Bacillota", "I", "Bacilli", "A", "RF39", "UBA660", "CAKOSP01", "CAKOSP01", "sp934102335" ], "_meo": [ { "id": "MEO_0000054", "label": "feces" } ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }